Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03643 ATGAGTTCACTAAATTTTAACAATAACGGTTGTGGTTTCTCTTTGGACTTGAATGTTGCTTTTGAAACAGAGAAATTCGAGAAATCTAATAATTGTATTAGAGGTCGTTGGACACTAACCGAAGATGATAAGCTCAGAAAGCTTGTTAAATACTTTGGTCCTCACAATTGGAATCACATTGCGGAGCATTTTCATAGAAGACCAGGGAAAAGTTGCAGATTAAGGTGGATTAATCATCTAGACCCTGAAATTAACAAATCAACATTTAGTGAAGAAGAGGAGGTGAAGATTTTAGCTGCTCAAAAAATATATGGTAACAAATGGGCAATCATTTGCAAACTATTTCCTGGTAGATCTGATAATCAAGTTAAGAATCATTTTCATGTGATGAGGGCTAGGATGCAAAGGCAACAATCATCATTTTTCTTTCAAAAGAGAAATCCAATATTTCAAACCCCTCCAATGAATAATGTAGCTATTGGATCAGCTTGCACACTTGCCAGCCGCTTTACTAGGCCTTTACTTAATTGTCAAGCCTATGGTTCACAAATGGGTTTACATGGAGAAAAGAAGGTGAAAGCGGGAAATTTTGGTTATGAAACCAATTTCAGTGCAATTAAAGGTTCATATGTAGGTCATATGGGAAAGCTTAATAGTGTGGACGAATCTAATTGTTCATATTCAAACTCGGAAGCTTCGGTTGCAACAATAAGGACCAATGTATCAATTTTTGGGGAATTTGAAAATGCGAGGGGTAAGACTAAGGTGCAATTTATCGACTTCCTTGGAATAGGTGATAAATAG 804 0.3619 MSSLNFNNNGCGFSLDLNVAFETEKFEKSNNCIRGRWTLTEDDKLRKLVKYFGPHNWNHIAEHFHRRPGKSCRLRWINHLDPEINKSTFSEEEEVKILAAQKIYGNKWAIICKLFPGRSDNQVKNHFHVMRARMQRQQSSFFFQKRNPIFQTPPMNNVAIGSACTLASRFTRPLLNCQAYGSQMGLHGEKKVKAGNFGYETNFSAIKGSYVGHMGKLNSVDESNCSYSNSEASVATIRTNVSIFGEFENARGKTKVQFIDFLGIGDK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03643 267 CDD SANT 88 130 IPR001005 -
Trre3g03643 267 ProSiteProfiles Myb-like domain profile. 34 80 IPR001005 -
Trre3g03643 267 PANTHER MYB PROTEIN-RELATED 34 189 - -
Trre3g03643 267 Pfam Myb-like DNA-binding domain 37 94 - -
Trre3g03643 267 SUPERFAMILY Homeodomain-like 32 127 IPR009057 -
Trre3g03643 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Trre3g03643 267 Gene3D - 33 85 - -
Trre3g03643 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Trre3g03643 267 SMART sant 85 133 IPR001005 -
Trre3g03643 267 SMART sant 33 82 IPR001005 -
Trre3g03643 267 CDD SANT 36 80 IPR001005 -
Trre3g03643 267 FunFam MYB transcription factor 34 85 - -
Trre3g03643 267 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Trre3g03643 267 Gene3D - 87 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03643 Trre-Chr3 47096527 47097887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03643 32 147 MYB Transcription Factor Family AT3G29020 59.483 3.39e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre3g03643 Myb_DNA-bind_6 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03643 K09422 - jre:109000849 190.274