Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03642 ATGGCTTCTTCAGTTAAGCTATACAAGCCAACTGATCTGACAAATATAGGATGGAGATGGAACAGTTTAGAAGACTTAAAAAATAAGAAGAGAGTTACATGTGATTTTTGTGGTGAAGTGTCTACCGGAGGAATTACTAGGGTCAAGCAACATCAGATGGGTGTAGGAGGACAAGTTAAGGGTTGCCTAAAAACACCCGACGATGTTAAGAAACAATTGCGGGAGGCTGACGAAAAGAAAAAGGCTGCAAAGGCTGCCCTGGCAGGTGAAGTGAATGAAAATGCTGATGATATAGCAGATCTTCAAGAAATTTCAAGGATTCGAATTGGAAAAAGGCCAGTTGAATCAGGGAGTATGCCGGCTGCCCAAAAGAAGACAAAAGGGAAAAGTTGCAGATTAAGGTGGCGGAATCAACTACATCCTAAGCTTAATAGATCATCATTCAGTGAAGAGGAAGAGGCCAAGCTTTTGGTTGCTCAAAAATTTTATGGCAACAAATGGACAACCATTTGCAAACTATTTCATGGAAGGACAGACAATGCAGTTAAGAATCATTTTCATATTATGATGGCTAGGAAGCAAAAGGAGGCAAAAAAGAGAAACCCAACATTTGTAGCTAATTCAGCTTGCACTAGTATCAGCCAATTTGCTAAGCCTTTATTTAACTATCAAGCCTATGCTTCACAAATGGAAATGAGTTTACTTGGAGAAAGGAAGGTGGAAGGTGAGGATTTTAGCTATGATAACAATTTCAGTGCAATGAAAGGTTGA 771 0.3956 MASSVKLYKPTDLTNIGWRWNSLEDLKNKKRVTCDFCGEVSTGGITRVKQHQMGVGGQVKGCLKTPDDVKKQLREADEKKKAAKAALAGEVNENADDIADLQEISRIRIGKRPVESGSMPAAQKKTKGKSCRLRWRNQLHPKLNRSSFSEEEEAKLLVAQKFYGNKWTTICKLFHGRTDNAVKNHFHIMMARKQKEAKKRNPTFVANSACTSISQFAKPLFNYQAYASQMEMSLLGERKVEGEDFSYDNNFSAMKG 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03642 256 Coils Coil 73 93 - -
Trre3g03642 256 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Trre3g03642 256 SUPERFAMILY Homeodomain-like 127 195 IPR009057 -
Trre3g03642 256 CDD SANT 147 187 IPR001005 -
Trre3g03642 256 SMART sant 144 192 IPR001005 -
Trre3g03642 256 PANTHER MYB PROTEIN-RELATED 122 203 - -
Trre3g03642 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 194 IPR017930 -
Trre3g03642 256 Gene3D - 146 211 - -
Trre3g03642 256 Pfam Myb-like DNA-binding domain 145 187 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03642 Trre-Chr3 47075487 47083193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03642 128 200 MYB Transcription Factor Family AT5G17800 60.274 7.92e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g03642 Myb_DNA-binding 5.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03642 K09422 - zof:122043308 114.39