Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03635 ATGGATCCAAATCAAAAGAAAAATAAAGAGCTGGTCGACAAATTTTGGGAAGAACAATTCAAGGAACTTCGCGAGACCGATGATTTTAAGCCTCTTATTCCTATCTCCGAAGTTAAGGAGATCATGGAAGAGGAAGCAGATGTGAAGATTGCAAATGAGACTTGTGTTTTCATGGCAAAAGCTTGTGAATTGTTCATTAAGGAACTGACAATGAGATCTATGCTCAAAATGAAAGATGCTGGAAGGACAACAATTGAAATCAATGACGTGGTTGATTCTTTTGCTGATATTGAATCGGAGACTCAAATGCAGGATGACAAAACTCAAGTTTCTCCAAAGGAAGATGATTAA 351 0.3732 MDPNQKKNKELVDKFWEEQFKELRETDDFKPLIPISEVKEIMEEEADVKIANETCVFMAKACELFIKELTMRSMLKMKDAGRTTIEINDVVDSFADIESETQMQDDKTQVSPKEDD 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03635 116 MobiDBLite consensus disorder prediction 100 116 - -
Trre3g03635 116 Pfam Core histone H2A/H2B/H3/H4 18 90 IPR007125 GO:0003677
Trre3g03635 116 SUPERFAMILY Histone-fold 4 93 IPR009072 GO:0046982
Trre3g03635 116 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 91 - -
Trre3g03635 116 MobiDBLite consensus disorder prediction 96 116 - -
Trre3g03635 116 Gene3D Histone, subunit A 2 105 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03635 Trre-Chr3 46915686 46916036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03635 15 115 CCAAT-HAP5 Transcription Factor Family AT1G08970 39.806 2.69e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03635 K08066 - tpra:123885942 171.4