Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03625 ATGAATGGTGAAGGTGACATGAGTGTTAAAGATCATTCTACTATCATGCTCTTTGGTAAGAAGATTCCGGTGCCGGAATATCATATTCCGGCGACATCTCAAAAGGGTTGTCAGATTCAGCCCAATTCTACAACCATGAATGCTTGCAGTAACTTGAAACAAACAAGAATTGAAATGCCTCGTACTCAAAACATTGAGATACCAAAGAATTCTTCTAAACAAGAAAATGAATCAAAAGTTACTACAAGCACAGTGGAAGATACTATGGAAGCTAGCAGCACAGATCAAGACAAAGTCCTAAAGAAACCAGACAAGATTGTTCAATGTCCGAGATGCAACAGTTTCGACACGAAATTTTGTTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTCTGCCGTAACTGTCATAGATATTGGACCGCAGGAGGAACAATGAGAAACGTTGCTGTCGGTGCAGGGAGACGGAAGAACAAACACATAGGTTCGCAGTATCGTCAAATGATTGTAGCGTCCGGTGGAACTCCGGCCGCAAATTTAGAAGCCAATGACTCTCTCCAACATGATAATGGTATTGTCTTAAAATTCGGTCTAGATGTTGATGCAAGTGCTAACAATGGTACGGAAAATCGAGAAGAATCATCATCATTATGTGTATCTTCTGTGACAAATGGTTATACTCGAGGAACCGAGTTAACAGAATCCGAACAAAATAGGTCAAAACCTTTGCAGAGTTACCCTGCATCTTCATGGATAATTCCAATGAATCAAAGTTGGAACAATGTTACTTCCATGGTTCAATCTTCTATGCAAATGTATCCTACTACAATGCAATGGTGTCACGCACCGATGGTTGCGGTTACAAACATTTTCACGCCAAACATCAGCTTGCAATTTGTTCCTGGTTCATATGGAAATGGAAATGTTTCAATTGGTTCAAATGGTTGCACTTCACCTTCTTCATCTACTACTAGTAACAGTTTATGCTCAGGTAATGGATCACCAATCCTTGGAAAACACACTAGAGATTCTGTTTTGACTCATGAAGAGAAACCGGAAATGCGTGTTTTTGCACCGAAGACTCTTAGAATCGATGAAACAAATCTTGAATAG 1116 0.397 MNGEGDMSVKDHSTIMLFGKKIPVPEYHIPATSQKGCQIQPNSTTMNACSNLKQTRIEMPRTQNIEIPKNSSKQENESKVTTSTVEDTMEASSTDQDKVLKKPDKIVQCPRCNSFDTKFCYFNNYNVNQPRHFCRNCHRYWTAGGTMRNVAVGAGRRKNKHIGSQYRQMIVASGGTPAANLEANDSLQHDNGIVLKFGLDVDASANNGTENREESSSLCVSSVTNGYTRGTELTESEQNRSKPLQSYPASSWIIPMNQSWNNVTSMVQSSMQMYPTTMQWCHAPMVAVTNIFTPNISLQFVPGSYGNGNVSIGSNGCTSPSSSTTSNSLCSGNGSPILGKHTRDSVLTHEEKPEMRVFAPKTLRIDETNLE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03625 371 PANTHER CYCLIC DOF FACTOR 2 10 368 IPR045174 GO:0003700|GO:0006355
Trre3g03625 371 MobiDBLite consensus disorder prediction 60 98 - -
Trre3g03625 371 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Trre3g03625 371 MobiDBLite consensus disorder prediction 316 335 - -
Trre3g03625 371 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Trre3g03625 371 MobiDBLite consensus disorder prediction 60 90 - -
Trre3g03625 371 Pfam Dof domain, zinc finger 104 161 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03625 Trre-Chr3 46876757 46879006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03625 77 367 C2C2-Dof Transcription Factor Family AT5G39660 36.909 7.25e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre3g03625 zf-Dof 8.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03625 - - tpra:123887337 673.7