Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03621 ATGGTGTTTTGTGATCACTGTTGTAGAAGTGTCGATGGAATGCGTGTTGATGATGGAAATTTATGTTGTGAGGATTGTGGGAAGCTGTTGGAAGATTATTATTTTTCTAATGAGGTGACTTTTGTGAAAAATGCTGCTGGACAGAGCAAATTATCTGGCAATTTGGTAAGGGGTGTTCACAATGACATCTCTGAATCACGTGCAAGGACTATAGAAAGAGCTAAAGATTATATCAGTAATCTAAGTCGCACCCTTGGAGTGGATGATGGAAGTATGGTTGACGAAGCTTTGGCCTTTTATACAATAGGACTAGAGCAAAAGTTTACCAAGGGACGAAAATCAGAACATGTACAAGCAGCTTGTCTCTATATTGCATTCCGGGATAAAGAGAAGCCATACCTTCTTATTGAATTTTCAAATTGTTTAAGGACAAATGTTTATGCGCTTGGCGCAGTTTTTTTGCAGCTTTGTAAATTGTTAAGGCTTCAAAATCACCCAATTGTTCAAAAGCCTGTTGATCCCAGTCTTTTTATTTCCAAATTTACGAATAATTTGTTAAAGCAGAGGAATCTGGCTGTCTCAAACACTGCACTTAATATTATTGTCAGAATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTGGCGGGATATGCGGTGCAGCATTATACATGGCTGCTCTTGCACATGGTTTTACATGCTCTAAGTCAGATATTCTAAGAATCGTGCATGTATGTGAAGCAACATTGACCAAGCGGCTGGTAGAGTTTGAGAATACAGAATCTTCCAGCTTGACTATTGATGAGTTGAATGCAATGGCAAAAGATTCTGAAAGAACTCCACTTAAAATACCAAATGGCAAACTGGACAACAAGGATCTACTGTGTCAACACAAAGAGGATCCACAGCGTCAACACTTTGCACTCGGATTATGTGAAGATTGCTACAAGGATTTTGAGACACTCTCTGGTGGACTTGATTGTGGTCATGATCCTCCTGCATTCCAGCGTGCTGAGAGGGATAGAACGGTAAAGTCACAATCCGAGGAGAATGCTAATCAATCAGCTGATTTTGCAATGGATTCAAATGGTGCATACGAGAGCCAAATAGAGTCACATGCCTCTGAGCCTGAAAGTATTGGGGGTGATGAAGAATATGTGGCGACCAAAGATGGTGAACATGATAAATCACATATAGAAGATGATATGAACGCAAAAACTCAAGATGAATCAGAAAGTCTCTCTGATATTGATGATAAGGAGGTTGATGGCTACCTTCACAGTGAGGAGGAAAAACAATACAAGAAGAAAATATGGGAATTTAATAATCGAGAATATCTCGAGGAACAAGCTATTAAGGAAGCAGCTGCAGCAGCTGAAAGGAGAAAATTAGAAGAGGAATTAAAAAATTATTCTCCTGAATCTCTTGAAGCAAGAAAGCTTGCTGCATCTGTTAGTGCAGCTGTGGCAAAATCAAGAAAGGAATTGAAGCAGAAACGAGCTCAAGAGGCAAAAAGTTTGGGTCCTGCTCAATCTGCTGTAGAGGCAACTAGTCGAATGTTGAAAACAAAGAGGCTCAGCTCCAAAGTCAATTCGGATGTCTTGGAGAAATTATTTCATAAACCTGAAGTTCAAGATAATCATAAGAAAGCACGGTTTGATTCACCCTCAGACAATGATGATAATTTGGAATCAAAGTCAACGCACATAGTAAAGGAGGATGAGTTGGAACCAGCCGATGAATTCGCGGACAATGTTGATATGGTTGGAGAATATGGTGACATTTTGTATCCAGATGATGGATATGAGCCATATGACTATGAGGATGATGGTTACTGTGGCTATGATGGTTTTTAG 1857 0.399 MVFCDHCCRSVDGMRVDDGNLCCEDCGKLLEDYYFSNEVTFVKNAAGQSKLSGNLVRGVHNDISESRARTIERAKDYISNLSRTLGVDDGSMVDEALAFYTIGLEQKFTKGRKSEHVQAACLYIAFRDKEKPYLLIEFSNCLRTNVYALGAVFLQLCKLLRLQNHPIVQKPVDPSLFISKFTNNLLKQRNLAVSNTALNIIVRMKRDWMQTGRKPGGICGAALYMAALAHGFTCSKSDILRIVHVCEATLTKRLVEFENTESSSLTIDELNAMAKDSERTPLKIPNGKLDNKDLLCQHKEDPQRQHFALGLCEDCYKDFETLSGGLDCGHDPPAFQRAERDRTVKSQSEENANQSADFAMDSNGAYESQIESHASEPESIGGDEEYVATKDGEHDKSHIEDDMNAKTQDESESLSDIDDKEVDGYLHSEEEKQYKKKIWEFNNREYLEEQAIKEAAAAAERRKLEEELKNYSPESLEARKLAASVSAAVAKSRKELKQKRAQEAKSLGPAQSAVEATSRMLKTKRLSSKVNSDVLEKLFHKPEVQDNHKKARFDSPSDNDDNLESKSTHIVKEDELEPADEFADNVDMVGEYGDILYPDDGYEPYDYEDDGYCGYDGF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03621 618 Coils Coil 447 467 - -
Trre3g03621 618 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 530 IPR000812 GO:0006352|GO:0070897
Trre3g03621 618 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Trre3g03621 618 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Trre3g03621 618 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Trre3g03621 618 SUPERFAMILY Cyclin-like 73 163 IPR036915 -
Trre3g03621 618 MobiDBLite consensus disorder prediction 539 584 - -
Trre3g03621 618 FunFam Transcription factor IIIB subunit 173 262 - -
Trre3g03621 618 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Trre3g03621 618 SMART cyclin_7 76 158 IPR013763 -
Trre3g03621 618 SMART cyclin_7 176 259 IPR013763 -
Trre3g03621 618 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Trre3g03621 618 MobiDBLite consensus disorder prediction 338 358 - -
Trre3g03621 618 Gene3D - 173 264 - -
Trre3g03621 618 Pfam Brf1-like TBP-binding domain 415 539 IPR011665 -
Trre3g03621 618 Gene3D Single helix bin 406 457 - -
Trre3g03621 618 SUPERFAMILY Cyclin-like 172 263 IPR036915 -
Trre3g03621 618 MobiDBLite consensus disorder prediction 391 416 - -
Trre3g03621 618 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Trre3g03621 618 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
Trre3g03621 618 MobiDBLite consensus disorder prediction 481 522 - -
Trre3g03621 618 Gene3D - 63 165 - -
Trre3g03621 618 MobiDBLite consensus disorder prediction 539 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03621 Trre-Chr3 46736058 46747231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03621 1 524 Inorganic Solute Cotransporters AT2G01280 43.315 4.99e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03621 K15196 - gmx:100789154 654.44