Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre3g03612 | ATGTTGTGGGTTGACAAATATCGTCCCAAAACCCTAGACAATGTTATGGTTCACAATGATACCGCTCTTAATCTCAAGAAATTGGTTTCAGAACATGATTGCCCCCATTTGCTGTTTTATGGTCCATCAGGTTCTGGCAAGAAAACCCTAATTATGGCTCTTCTTCGTCAAATGTTTGGACCCGGTGCTGAAAAGGTGAAAGTGGAAAATAGGGCGTGGAAAGTGGATGCCGGGAGTAGATCTATTGATTTAGAGCTGACAACGTTATCAAGTGCCAATCATATCGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAAAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTGCTTAATGATGTGGACAAACTGTCTAGAGAAGCGCAACACTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTATTGCAGATTAATTTTATGTTGCAATAGTTCTTCGAGAGTTACAGAAGCCATCCGCTCTCGTTGTCTTAATGTGCGAATAAATGCACCAAGTGAAGAACAGATTGTTGAAGTCTTACAGTTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTTGCTGCTCGTATAGCCGAGAAATCAAATCGGAATTTGAGGAGAGCCATATTATCATTAGAGACTTGCCGTGTCCAACAGTATCCTTTCACTGACAAGCAAACAATTCCTCCAATGGACTGGGAGGAATATATTTCAGAAATTGCATCTGACATTATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTTCTAATCAATTGCATTCCTCCAGAGATCATTTTGAAGAGGCTATTATATGAGCTATTGAGGAAACTGGATGCAGAACTAAAGCATGAAGTCTGCCATTGGGCAGCATATTATGAACATAGGATGCGCCTTGGACAGAAGGCCATTTTTCACATTGAAGCTTTCGTGGCCAAGTTCATGAGTGTCTATAAATCCTTCCTCATTGCAACATTTGGCTGA | 1065 | 0.4056 | MLWVDKYRPKTLDNVMVHNDTALNLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSFAARIAEKSNRNLRRAILSLETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG | 354 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre3g03612 | 354 | CDD | AAA | 25 | 190 | - | - | |
| Trre3g03612 | 354 | SMART | AAA_5 | 33 | 192 | IPR003593 | GO:0016887 | |
| Trre3g03612 | 354 | Pfam | DNA polymerase III, delta subunit | 24 | 188 | - | - | |
| Trre3g03612 | 354 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 3 | 338 | - | - | |
| Trre3g03612 | 354 | Gene3D | - | 190 | 248 | - | - | |
| Trre3g03612 | 354 | Gene3D | - | 252 | 345 | - | - | |
| Trre3g03612 | 354 | CDD | HLD_clamp_RFC | 189 | 257 | - | - | |
| Trre3g03612 | 354 | FunFam | Replication factor C subunit 3 | 252 | 345 | - | - | |
| Trre3g03612 | 354 | Gene3D | - | 1 | 189 | IPR027417 | - | |
| Trre3g03612 | 354 | FunFam | replication factor C subunit 3 | 190 | 248 | - | - | |
| Trre3g03612 | 354 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 253 | IPR027417 | - | |
| Trre3g03612 | 354 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 251 | 346 | IPR008921 | GO:0003677|GO:0006260 | |
| Trre3g03612 | 354 | FunFam | Replication factor C subunit 5 | 1 | 189 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre3g03612 | Trre-Chr3 | 46637403 | 46644275 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre3g03612 | 1 | 354 | Core DNA Replication Machinery Family | AT5G27740 | 85.028 | 0.0 | 649 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre3g03612 | K10756 | - | gmx:100818329 | 661.759 |