Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03606 ATGAATAGTAACAGTAATAATAATAATAATCCAAACTCTTCATCATTTCTCGTTCAAAACTCTCACTTAATCCTTCCATGGCTAACTCATCAACAACTCGCCAATCTCTCTTTAACCTGTAAATCTCTCCACAATCTCACCAAAACCATAACCCTAATTCGTATTTCCGATGCTTCTAGAACCTTCGAGAATTTCCCAATCCCATTCCATAACCCTAATTCACATCATCCTTATTCCTACTTTCTCTACACACCTTCACTCATTCTCTCTAACAATCTCCCTCGTTATCAACCATGGGGATGGATGGGTAATTCTGTAATTTCACCAATTGCGGTTAAAACGGTTGATGAATTGGAATCAGTGAGTTTTGTTGATGTGGTTGGATGTGAGTGTGGTGAGGTTTGTGATGATGATGATGGGTGTTTGTGTTTTGATGGTGGGGATGGTGATGTTGGAAGAGAGTGTGGGATGGGTTGTTCTTGTGGAAGGGAGTGTGGGAATAGAGTGAGTCAAAATGGGGTTAGGGTTAGGGTTAAGATTGTTAAGTGTGATGGTAAAGGGTGGGGTTTGTTTGCTGATCAAGTCATTGCTAAAGGAGAGTTTTTGTTTCAATATGCAGGTGAACTATTGACAACCAAGGAAGCACAGAGGAGACAACAATATTATGATGAACTTTCATCGCGCGGTCGTTTCTCTTCCGCACTTTTAGTTGTAAGAGAACATCTTCCATCTGGAAAAGCATGTCTGCGATTGAACATAGATGCAACAAAGATAGGAAACGTTGCACGGTTTGTAAATCATTCGTGTGATGGTGGTAATTTAAGCACAAAGCTAATTAGAAGTTCAGGAGCTTTGTTCCCCCGTCTTTGCTTCTTTGCTTTGAAAGATATCCAAAAAGACGAAGAGCTTACTTTCAGCTATGGAGAAATCAGGAAAAGGCCCAACGGGATGACATGCTACTGCAACAGCACTTCTTGCTTTGGAACATTGCCCTCCGAAGACACTTGA 1008 0.4087 MNSNSNNNNNPNSSSFLVQNSHLILPWLTHQQLANLSLTCKSLHNLTKTITLIRISDASRTFENFPIPFHNPNSHHPYSYFLYTPSLILSNNLPRYQPWGWMGNSVISPIAVKTVDELESVSFVDVVGCECGEVCDDDDGCLCFDGGDGDVGRECGMGCSCGRECGNRVSQNGVRVRVKIVKCDGKGWGLFADQVIAKGEFLFQYAGELLTTKEAQRRQQYYDELSSRGRFSSALLVVREHLPSGKACLRLNIDATKIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFALKDIQKDEELTFSYGEIRKRPNGMTCYCNSTSCFGTLPSEDT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03606 335 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 126 329 - -
Trre3g03606 335 Pfam SET domain 187 308 IPR001214 GO:0005515
Trre3g03606 335 Gene3D SET domain 48 330 IPR046341 -
Trre3g03606 335 SMART set_7 176 314 IPR001214 GO:0005515
Trre3g03606 335 SUPERFAMILY SET domain 65 328 IPR046341 -
Trre3g03606 335 ProSiteProfiles SET domain profile. 176 308 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03606 Trre-Chr3 46587452 46590199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03606 154 330 C2H2 Transcription Factor Family AT2G23740 35.294 5.42e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre3g03606 SET 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03606 K11433 - gmx:100786871 419.468