Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03605 ATGAAGACAGAAACAAAAATGAAGATTCCGAAAACAACGACGATGAATAGTAACAGTAATAATAATAATAATCCAAACTCTTCATCATTTCTCGTTCAAAACTCTCACTTAATCCTTCCATGGCTAACTCATCAACAACTCGCCAATCTCTCTTTAACCTGTAAATCTCTCCACAATCTCACCAAAACCATAACCCTAATTCGTATTTCCGATGCTTCTAGAACCTTCGAGAATTTCCCAATCCCATTCCATAACCCTAATTCACATCATCCTTATTCCTACTTTCTCTACACACCTTCACTCATTCTCTCTAACAATCTCCCTCGTTATCAACCATGGGGATGGATGGGTAATTCTGTAATTTCACCAATTGCGGTTAAAACGGTTGATGAATTGGAATCAGTGAGTTTTGTTGATGTGGTTGGATGTGAGTGTGGTGAGGTTTGTGATGATGATGATGGGTGTTTGTGTTTTGATGGTGGGGATGGTGATGTTGGAAGAGAGTGTGGGATGGGTTGTTCTTGTGGAAGGGAGTGTGGGAATAGAGTGAGTCAAAATGGGGTTAGGGTTAGGGTTAAGATTGTTAAGTGTGATGGTAAAGGGTGGGGTTTGTTTGCTGATCAAGTCATTGCTAAAGGAGAGTTTTTGTTTCAATATGCAGGTGAACTATTGACAACCAAGGAAGCACAGAGGAGACAACAATATTATGATGAACTTTCATCGCGCGGTCGTTTCTCTTCCGCACTTTTAGTTGTAAGAGAACATCTTCCATCTGGAAAAGCATGTCTGCGATTGAACATAGATGCAACAAAGATAGGAAACGTTGCACGGTTTGTAAATCATTCGTGTGATGGTGGTAATTTAAGCACAAAGCTAATTAGAAGTTCAGGAGCTTTGTTCCCCCGTCTTTGCTTCTTTGCTTTGAAAGATATCCAAAAAGACGAAGAGCTTACTTTCAGCTATGGAGAAATCAGGAAAAGGCCCAACGGGATGACATGCTACTGCAACAGCACTTCTTGCTTTGGAACATTGCCCTCCGAAGACACTTGA 1050 0.4067 MKTETKMKIPKTTTMNSNSNNNNNPNSSSFLVQNSHLILPWLTHQQLANLSLTCKSLHNLTKTITLIRISDASRTFENFPIPFHNPNSHHPYSYFLYTPSLILSNNLPRYQPWGWMGNSVISPIAVKTVDELESVSFVDVVGCECGEVCDDDDGCLCFDGGDGDVGRECGMGCSCGRECGNRVSQNGVRVRVKIVKCDGKGWGLFADQVIAKGEFLFQYAGELLTTKEAQRRQQYYDELSSRGRFSSALLVVREHLPSGKACLRLNIDATKIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFALKDIQKDEELTFSYGEIRKRPNGMTCYCNSTSCFGTLPSEDT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03605 349 Gene3D SET domain 62 344 IPR046341 -
Trre3g03605 349 MobiDBLite consensus disorder prediction 1 27 - -
Trre3g03605 349 SMART set_7 190 328 IPR001214 GO:0005515
Trre3g03605 349 ProSiteProfiles SET domain profile. 190 322 IPR001214 GO:0005515
Trre3g03605 349 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 140 343 - -
Trre3g03605 349 MobiDBLite consensus disorder prediction 8 27 - -
Trre3g03605 349 Pfam SET domain 201 322 IPR001214 GO:0005515
Trre3g03605 349 SUPERFAMILY SET domain 79 342 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03605 Trre-Chr3 46587452 46590241 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03605 168 344 C2H2 Transcription Factor Family AT2G23740 35.294 4.58e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre3g03605 SET 3.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03605 K11433 - gmx:100786871 419.468