Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03603 ATGGCTGAGTTCCAAGGTGGTGATGGTAGTTCGGGAACTAGGCGTACTACAATGCGTTGTGGGGCTTGCAAGTTTTTGACGAGGAAGTGTACCAGTGAATGCATCTTTGCACCCTACTTTGGTACAGAAAATGGTGAAGCTAGCTTTATGGTTGTGCACAAGGTGTTTGGTGCTAAAAATGTGTCGAAGCTATTGTCCAACGTTTCAACTAACCACCGCCACGAAGCAGTTGCGACTATATACTATGAGGCTCAGGCTAGGCTATCTGATCCAGTTTATGGTTGTGTGTCCACCATTCTTTCCTTGCAGCAACAGGTGGCAGCAATGCAAGCAGAAGTCCGAATGATGCAAATTGAGCTGATGAACAAAGGATTTACTTGTGCAAATGCTCTTCAAACCACACCCCAGCAGCAGCATCAGATGCTACAGCAGCCAAACTTCAACGTAGCAGTGCAGCCAGCATATTCCAACAATTCATATGCTTCCACCAACAACCTCATGAACATGAACAACTTCAACTCTGGTTTTGACCTCACAATGGAGATGGCACCCTCATCACACAGCTTAGAGCCTTTTCAAAACTCCTGGTTCTCTCATTATGAGGGAGATTACTAA 615 0.4553 MAEFQGGDGSSGTRRTTMRCGACKFLTRKCTSECIFAPYFGTENGEASFMVVHKVFGAKNVSKLLSNVSTNHRHEAVATIYYEAQARLSDPVYGCVSTILSLQQQVAAMQAEVRMMQIELMNKGFTCANALQTTPQQQHQMLQQPNFNVAVQPAYSNNSYASTNNLMNMNNFNSGFDLTMEMAPSSHSLEPFQNSWFSHYEGDY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03603 204 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 173 - -
Trre3g03603 204 Coils Coil 99 119 - -
Trre3g03603 204 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Trre3g03603 204 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03603 Trre-Chr3 46580563 46582300 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03603 20 204 AS2 family AT3G03760 53.646 4.41e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre3g03603 LOB 4.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03603 - - aprc:113866578 224.942