Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03602 ATGTACTCTCCACAAAGACAACATTTCCAAGTGTTTGGTGCTAGCAATGTGTCAGAGCTCTTGTCCAATGTTTCAATTAACTATCGCCACGAAGCAGCGGTGACTATATTCTATGAGGCTCAGGCTAGGCTATCTGATCCGGTTTATGATTGTGTGTCCACCATTCTTGCTTTGCAGCAACAGGTGGCAGCAATGCAAGCAGAGGTCTCAACCATGCAAACTGAGCTGATGAACAGAAGATTTGCAGGTGCAAATACGGCACCCTCATCACACAGCTTCGAGACTTTTCAAAACTCCTGGTTCTCTCATTATGAGGAAGATGACTAA 327 0.4495 MYSPQRQHFQVFGASNVSELLSNVSINYRHEAAVTIFYEAQARLSDPVYDCVSTILALQQQVAAMQAEVSTMQTELMNRRFAGANTAPSSHSFETFQNSWFSHYEEDD 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03602 108 Pfam Lateral organ boundaries (LOB) domain 9 73 IPR004883 -
Trre3g03602 108 ProSiteProfiles LOB domain profile. 1 76 IPR004883 -
Trre3g03602 108 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 99 - -
Trre3g03602 108 Coils Coil 55 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03602 Trre-Chr3 46575076 46577589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03602 10 85 AS2 family AT3G03760 69.737 2.62e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre3g03602 LOB 4.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03602 - - aprc:113866578 111.694