Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03600 ATGATGATGGAACTTAGGAATCAGTTGAGGGTCATCTGCATTCACATTGTCAGCAGATCACTGCTCGCTCGGAATCTGTTAATCAAGAGACAGTGCCAAACTGTTGACTTTGTGAATGCAGAAGAAAAGGCATGTTTGAGATTGAACATAGATGCGACAACAAGAATAGGAAACATTGCAGGGTTTGTTGCACGGTTTGTAAATCATTCATGTGATGGTGGCAATTTATGCACAAGCACAAAGCTAATTAGAAGTTCAGGAGGTTTGTTTCCCCGCCTTTTCTTCTTTGCTTTGAAAGATATCCAAAAAGACGAAGAGCTTACTCTTAGAACATTGCTCTCTGAAGACACTTGA 354 0.404 MMMELRNQLRVICIHIVSRSLLARNLLIKRQCQTVDFVNAEEKACLRLNIDATTRIGNIAGFVARFVNHSCDGGNLCTSTKLIRSSGGLFPRLFFFALKDIQKDEELTLRTLLSEDT 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03600 117 ProSiteProfiles SET domain profile. 5 112 IPR001214 GO:0005515
Trre3g03600 117 Pfam SET domain 43 109 IPR001214 GO:0005515
Trre3g03600 117 SUPERFAMILY SET domain 41 109 IPR046341 -
Trre3g03600 117 Gene3D SET domain 15 110 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03600 Trre-Chr3 46565312 46566495 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre3g03600 SET 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03600 K11433 - gmx:100786871 95.5153