Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03599 ATGGCTGACTCACAAGGTGGTGATGGAAGTTCAGGAAACAGGCGTGGTAAAGGCGCCAATACTGCAAAGCGTGCAATGGCACAAGATGCATCGGCTGTACCCCCGTGTGGTGCTTGCAAGTTTTTGAGGAGGAAGTGTAGTGGTGCGTGTATCTTTGCACCCTACTTTGGGACTGACCAAGGTGCGGCTAGATTTGCAGCTGTGCACAAGGTTTTTGGTGCCAGCAATGTGTCCAAACTCCTATCCAGTATTCCAACTAACCACCGCCATGAAGCCGCGGCAACTATTTCTTATGAAGCTCAGGCTCGGTTATCCGATCCTGTTTATGGTTGTGTGTCAACCATTCTTGCTTTGCAGCAACAGGTGGCTGCAATGCAAGCGGAAGTCTCGATGATGCAATCTCAGCTGATGAATCGGAGATATGCATATGCAAGTGCTCTTCAGACCACGCACCAGCAGCAGCATCAAATACTGCACCAACCAAACTTCAATGTGTCTGTGCAGCCGGCATACTCCAACAACTCATCTGCTTCGACCAACAATTTCATGAACATGAACAGTTTCAACCCTGGTTTTGACCTCACAATGGAGACAGCACCTTCGTCGCACAGCTTAGAGCCTTTTCAAAACTCCAGGATGACTCCTTATGAGGAAGATGATTAA 663 0.4857 MADSQGGDGSSGNRRGKGANTAKRAMAQDASAVPPCGACKFLRRKCSGACIFAPYFGTDQGAARFAAVHKVFGASNVSKLLSSIPTNHRHEAAATISYEAQARLSDPVYGCVSTILALQQQVAAMQAEVSMMQSQLMNRRYAYASALQTTHQQQHQILHQPNFNVSVQPAYSNNSSASTNNFMNMNSFNPGFDLTMETAPSSHSLEPFQNSRMTPYEEDD 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03599 220 MobiDBLite consensus disorder prediction 1 26 - -
Trre3g03599 220 Coils Coil 115 135 - -
Trre3g03599 220 MobiDBLite consensus disorder prediction 1 17 - -
Trre3g03599 220 ProSiteProfiles LOB domain profile. 34 136 IPR004883 -
Trre3g03599 220 MobiDBLite consensus disorder prediction 196 211 - -
Trre3g03599 220 MobiDBLite consensus disorder prediction 196 220 - -
Trre3g03599 220 Pfam Lateral organ boundaries (LOB) domain 35 133 IPR004883 -
Trre3g03599 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 33 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03599 Trre-Chr3 46563569 46564603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03599 1 220 AS2 family AT3G03760 53.061 4.78e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre3g03599 LOB 1.7e-37 No_clan