Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03598 ATGGAAAATAAGCTTCATCCAAAAGTGCTTCTAGTTTTAGTCACAATTTTTCTTTCAATTTCTTACACAAACCAACTTCAATCCTCTCACACTCGAACCCTTTTACGAATCAAACGTCTCTTAAACTTTCCATCAATTTTAAGCTCATGGAATTCAACCACAGATTTTTGCAACACAGATTCAAAAGCTTCTCTAAGTGTTGTATGCTATGAACAAACCATAACTCAGTTACACATAGTTGGTGAAACAAAACCTCAACAACTTCTTCCAAAAAACTTCTCAATAGATTCATTTTTCACAACACTTTTGAGAATTCCAACTCTAAAAGTTCTCACACTAGTTTCCTTAGGCTTGTGGGGTCCACTTCCTAGCAAAATTAGTGGCTTATCATCTTTGGAAATAGTTAACATGAGTTCAAATTTTCTATATGGTAAAATCCCTCAAGAACTTCCATTACTCTCAAATCTTCAAGCACTCATTCTTGATAACAATATGTTTGATGGACATTTGCCGGATTGGTTGGATTCGTTTCCATCGTTAACCGTTTTGAATTTGAATCAAAATTTGTTCAACGGTTCGCTTCCTGATTCGTTGAGTAGCTTAACAAACATGCGAGTTCTTTCGCTTTCTCATAACCATTTCTACGGATCAGTACCGGATTTAAGCCGGTTGGTTAATCTTCAAGTGTTGGAATTAGATGATAATAGTTTTGGTCCTAACTTTCCAAGAACTTATAACAAGTTGGTTACTTGTGTCCTAAGAAACAACAAGTTTAGGTCTAGCTTACCTGATAATATGAGTTCATATTATCAACTTGAGAGATTCGATATCTCAGAAAATGCTTTTGTTGGACCATTTCAATTAGAATTGTTTTCACTTCCTGCAATTAGTTATATCAACATTTCAAGTAACAAATTATCAGGAATGCTTTTCGAGAATCTGTCGTGTAATTCTCTTCTAGAAGAAGTTGATTTGTCTTCAAATCTTTTGACTGGAAGATTACCAAAATGTTTAGTGTCAAATTCCTATGATAGGAAATTTCTGTATGGTGGAAATTGTTTAGAAGATACAAATCACAATCAAAATCAACATGAACAAGCTTTTTGTCACACTGAAGCTATAGCTGTTGGAATAGGACCTGATGAGAGAAAGAAGCATAAAAGAGTATCTAAAACAGTTTTAGCTTTTAAGATTATTGGTGGACTTTTTGGAGGAATTTCACTTGTTGCATTGATTTTTATGATTATGATTAGAAGAAGAAATGGTAAAAGCATGATGATGATGAAGAATTCGAAAACAAAATTGATATCAGAAAATGTAGCTTCTGGAAAGTTAATCTCTGATTCAAGGTATGTACCTAAATCAATGAAGTTTGGAACTGTTGGCCTGCCACCTTATAGAGCTTTCTCACTGGAAGAGATTGTGACAGCTACTAACAACTTTGATTCTACTTCTTTCATTGGTGAAGGTTCTCAAGGAGAGATGAACAGAGGTCAACTAAAAGATGGTTCACTAGTTGCCATTAGAAGTGTGAAATTGATAAAAAGCTGCAGGACTAGAGATTTCATGCAGCACATAGAATTGATATCAAAATTCAGGCATCATCATTTAGTCAGTGTTCTTGGACATTGCTTTGAACATTATTTAGATGATTCAAATGTCAGAAGAATATTTATTGTCTTTGAGTATGTACCTAATGGATCACTCAAGACTTGGATCACAGATAGGCATTATAGAAAGTCTCTTACTTGGACTCAACGCATAGAAGCTTCAATTGGAGTGGCAAAGGGAATCAAATTTTTGCATACAGAGATTGTTCCTTCAGTATATTCAAATAATCTCAAAATTACAGATGTTTTATTGGATCAAAACTTTGTTGCAAAAATCAGTAGTTATAACATGCCTTTGTTATCCAACATTGGAAAGGTTGGTCAAGAAAATATATTCAAAAGTCCTAGCTTTAACAAAAGTGTAAAAAGTGAAGACAAGATTGATATATATGACTTTGGGGTGATATTGATGGAACTCATTCTAGGAAGGACAATAAAGTCAAGAAATGTGGACACTTTGAAAGATTTGCTACAATCAAGTATAACATCAGATGATGAAGCTAGAAGAAGCATTATAGATTCGTCGATTCGTAACGCGTGTTTGGATCAATCATTGAAGACAATGATGGAGATTTGTGTGAGATGTTTAGTTAAAGAGCCAGAAGAAAGGCCTTCTATAGAAGATGTCTTGTGGAATTTGCAGTTTGCTTCTCAAGTCCAAGATGCATGGAGAGGAGACTCTCTAAGTAGTGATAGCTCTCCCATCTCGCCTTTACCGTCTCAACGAATGAACTTCCGTTAG 2352 0.3465 MENKLHPKVLLVLVTIFLSISYTNQLQSSHTRTLLRIKRLLNFPSILSSWNSTTDFCNTDSKASLSVVCYEQTITQLHIVGETKPQQLLPKNFSIDSFFTTLLRIPTLKVLTLVSLGLWGPLPSKISGLSSLEIVNMSSNFLYGKIPQELPLLSNLQALILDNNMFDGHLPDWLDSFPSLTVLNLNQNLFNGSLPDSLSSLTNMRVLSLSHNHFYGSVPDLSRLVNLQVLELDDNSFGPNFPRTYNKLVTCVLRNNKFRSSLPDNMSSYYQLERFDISENAFVGPFQLELFSLPAISYINISSNKLSGMLFENLSCNSLLEEVDLSSNLLTGRLPKCLVSNSYDRKFLYGGNCLEDTNHNQNQHEQAFCHTEAIAVGIGPDERKKHKRVSKTVLAFKIIGGLFGGISLVALIFMIMIRRRNGKSMMMMKNSKTKLISENVASGKLISDSRYVPKSMKFGTVGLPPYRAFSLEEIVTATNNFDSTSFIGEGSQGEMNRGQLKDGSLVAIRSVKLIKSCRTRDFMQHIELISKFRHHHLVSVLGHCFEHYLDDSNVRRIFIVFEYVPNGSLKTWITDRHYRKSLTWTQRIEASIGVAKGIKFLHTEIVPSVYSNNLKITDVLLDQNFVAKISSYNMPLLSNIGKVGQENIFKSPSFNKSVKSEDKIDIYDFGVILMELILGRTIKSRNVDTLKDLLQSSITSDDEARRSIIDSSIRNACLDQSLKTMMEICVRCLVKEPEERPSIEDVLWNLQFASQVQDAWRGDSLSSDSSPISPLPSQRMNFR 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03598 783 Gene3D Ribonuclease Inhibitor 27 247 IPR032675 -
Trre3g03598 783 Gene3D Ribonuclease Inhibitor 248 349 IPR032675 -
Trre3g03598 783 Gene3D Transferase(Phosphotransferase) domain 1 564 765 - -
Trre3g03598 783 MobiDBLite consensus disorder prediction 762 783 - -
Trre3g03598 783 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 564 766 - -
Trre3g03598 783 SUPERFAMILY L domain-like 29 355 - -
Trre3g03598 783 Pfam Protein tyrosine and serine/threonine kinase 486 747 IPR001245 GO:0004672|GO:0006468
Trre3g03598 783 Gene3D Phosphorylase Kinase; domain 1 449 563 - -
Trre3g03598 783 ProSiteProfiles Protein kinase domain profile. 481 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03598 783 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Trre3g03598 783 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 246 - -
Trre3g03598 783 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 104 750 - -
Trre3g03598 783 SUPERFAMILY Protein kinase-like (PK-like) 460 754 IPR011009 -
Trre3g03598 783 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 454 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03598 Trre-Chr3 46553772 46559289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03598 43 776 Miscellaneous Gene Families AT3G03770 59.115 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre3g03598 PK_Tyr_Ser-Thr 6.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03598 - - gmx:100813207 1113.6