Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03587 ATGGATAGACTCATAAGATTAGAACCATCAAACATAGTACTAATAAGAGTTGAACAAGGGCAAAAATGTCAAGGAAAATTAACCTTAAACAATGTCATGTATACTATGCCAGTTGCATTTAGGATTCAACCACTAATCAAAACAAGATACACAATTAAACCTCAATCAGGAATCATTTCACCATTAGCATCACTAATCATAGAGATAACATATCATCCTCCACAACAAGGTTCAAATAATAATCTTCCTCACTCTTTTCCCTTTTCAGATGATTCATTTCTTCTCCATAGTGTTCTTGCTCCAGGAGCAGCCATTAAAGAACCTTCATCCATGTTTGATTCTGTTCCAAGTGATTGGTTCACTACAAAGAGAAAACAAGTTTTCATTGATAGTGCAATCAAAATCATGTTTGTTGGTTCACAAATTTTGACTCAACTTGTTGAAGATGGTAACTCAATGGATGATATAAGAGATGTTCTTGAAAAAAGTGATCCTTTATGGGAATCAGTTAACTCTAAAGATTCAAAAGGTCAAACTTTGCTTCATTTGGCTATTTCGAAAAATAGACCTGATCTTGTTCAATTGATTCTTGAATTTAAGCCTGATATTGAAGCTACAAATAATGTTGGATCAACCCCTCTTGAGGTTGCATCTTCCTCGGACGACTCGTTGATTGTTGAGCTTCTTTTAGCTCATAAGGCCAACACAGAAGGATCAGAATCTTCGGTCTTTCGACCGATTCATCATGCTTCGAGAGAAGGACACATGGAGATTCTAAGGCTTCTTTTACTCAAAGGTGCAAAAGTTGACTCTTTAACAAAAGATGGTAACACTTCTTTGCATTTAGCTGTTGAAGAAAAAAGAAGAGATTGTGCTAGGCTTTTGTTAGCAAACGGTGCGAGAACCGATGTTCGAAATACAAGAGAAGGTGATACACCTTTACACATAGCTGCAGCCAATGGAGATGAGAACATGGTGAAGTTACTACTTCATAAAGGAGCTACAAAATATGTGAGAAACAAACTAGGGAAAACGGCGTTCGATGTTGCGGCTGAGAACGGACACTCGCGCCTGTTCGATGCACTTCGTTTAGGGGACAATTTATGTGCGGCTGCGCGGAAGGGCGAGGTGAGGACAATCCAAAAGGTTTTGGAAAGTGGTGGAGTGATCAATGGAAGGGATCAAAATGGATGGACATCACTTCATAGGGCTTCATTCAAAGGAAGAATGGATGCTGTTAGGTTTCTTGTGGAGAAAGGTATTGATTTGGATGCAAAAGATGAAGATGGTTATACAGCTTTGCATTGTGCAGCTGAATCAGGACATGCTGATGTGACTGAGTTTTTGGTTAAGAAAGGTGCTGATGTTGAAGCAAGGACTAATAAAGGTGTGAGTGCTTTGCAAATTGTTGAGTCATTGAACTATATAGGGATTACAAGGATACTTGTTAATGGTGGTGCTAGTAGGGAAGGTTTGGGTGAAAAATTTCCAACTGCACCTTCTAAGATTCCATTTGGGAGTAAAGTTGACGGTGGGGGTGTGATGACGATGAAGAAGAAGATGAGTAGTCGAACTCGAGCGCTACGAGGTAGTTTCGATCGTTCGATGCCTTTGGCAGTGCTCTAG 1626 0.3948 MDRLIRLEPSNIVLIRVEQGQKCQGKLTLNNVMYTMPVAFRIQPLIKTRYTIKPQSGIISPLASLIIEITYHPPQQGSNNNLPHSFPFSDDSFLLHSVLAPGAAIKEPSSMFDSVPSDWFTTKRKQVFIDSAIKIMFVGSQILTQLVEDGNSMDDIRDVLEKSDPLWESVNSKDSKGQTLLHLAISKNRPDLVQLILEFKPDIEATNNVGSTPLEVASSSDDSLIVELLLAHKANTEGSESSVFRPIHHASREGHMEILRLLLLKGAKVDSLTKDGNTSLHLAVEEKRRDCARLLLANGARTDVRNTREGDTPLHIAAANGDENMVKLLLHKGATKYVRNKLGKTAFDVAAENGHSRLFDALRLGDNLCAAARKGEVRTIQKVLESGGVINGRDQNGWTSLHRASFKGRMDAVRFLVEKGIDLDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEARTNKGVSALQIVESLNYIGITRILVNGGASREGLGEKFPTAPSKIPFGSKVDGGGVMTMKKKMSSRTRALRGSFDRSMPLAVL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03587 541 Gene3D Immunoglobulins 1 128 IPR013783 -
Trre3g03587 541 SUPERFAMILY PapD-like 2 151 IPR008962 -
Trre3g03587 541 SUPERFAMILY Ankyrin repeat 169 492 IPR036770 -
Trre3g03587 541 ProSiteProfiles Ankyrin repeat region circular profile. 429 461 - -
Trre3g03587 541 SMART ANK_2a 342 371 IPR002110 GO:0005515
Trre3g03587 541 SMART ANK_2a 429 458 IPR002110 GO:0005515
Trre3g03587 541 SMART ANK_2a 309 338 IPR002110 GO:0005515
Trre3g03587 541 SMART ANK_2a 396 425 IPR002110 GO:0005515
Trre3g03587 541 SMART ANK_2a 275 304 IPR002110 GO:0005515
Trre3g03587 541 SMART ANK_2a 242 271 IPR002110 GO:0005515
Trre3g03587 541 SMART ANK_2a 209 238 IPR002110 GO:0005515
Trre3g03587 541 SMART ANK_2a 176 205 IPR002110 GO:0005515
Trre3g03587 541 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Trre3g03587 541 Pfam Ankyrin repeats (3 copies) 246 305 IPR002110 GO:0005515
Trre3g03587 541 ProSiteProfiles Ankyrin repeat region circular profile. 275 306 - -
Trre3g03587 541 ProSiteProfiles Ankyrin repeat profile. 242 274 IPR002110 GO:0005515
Trre3g03587 541 Pfam Ankyrin repeats (many copies) 169 217 IPR002110 GO:0005515
Trre3g03587 541 ProSiteProfiles Ankyrin repeat region circular profile. 176 208 - -
Trre3g03587 541 Pfam Ankyrin repeats (many copies) 398 450 IPR002110 GO:0005515
Trre3g03587 541 PRINTS Ankyrin repeat signature 310 325 IPR002110 GO:0005515
Trre3g03587 541 PRINTS Ankyrin repeat signature 445 459 IPR002110 GO:0005515
Trre3g03587 541 ProSiteProfiles Ankyrin repeat profile. 275 307 IPR002110 GO:0005515
Trre3g03587 541 ProSiteProfiles Ankyrin repeat profile. 209 241 IPR002110 GO:0005515
Trre3g03587 541 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Trre3g03587 541 Gene3D - 131 241 IPR036770 -
Trre3g03587 541 PANTHER ANKYRIN REPEAT-CONTAINING 245 488 - -
Trre3g03587 541 Gene3D - 362 493 IPR036770 -
Trre3g03587 541 ProSiteProfiles Ankyrin repeat region circular profile. 396 428 - -
Trre3g03587 541 ProSiteProfiles Ankyrin repeat profile. 396 428 IPR002110 GO:0005515
Trre3g03587 541 ProSiteProfiles Ankyrin repeat profile. 429 461 IPR002110 GO:0005515
Trre3g03587 541 ProSiteProfiles Ankyrin repeat region circular profile. 242 270 - -
Trre3g03587 541 Gene3D - 314 361 IPR036770 -
Trre3g03587 541 ProSiteProfiles Ankyrin repeat region circular profile. 309 334 - -
Trre3g03587 541 Pfam Ankyrin repeat 310 334 IPR002110 GO:0005515
Trre3g03587 541 Gene3D - 242 313 IPR036770 -
Trre3g03587 541 Pfam MSP (Major sperm protein) domain 5 111 IPR000535 -
Trre3g03587 541 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 138 IPR000535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03587 Trre-Chr3 46276829 46278454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03587 367 469 Ion Channels AT4G32500 32.039 3.54e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03587 - - gmx:100782444 763.837