Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03575 ATGCGGATTGCTGCAGAACTCCGCCCCGCTTTCATCTATCTTCATACATGTAAACCTCACAGCATAGTGCATGCTGACGTGAAGCCCGATAATGTCATTCTAGATGCAAACTTTGTCAGCAAGCTTGGTGATTTTGGACTGTGTCGTACTTTATCAAACTATGAATATATTAGTGATAATAATACGTTGTTTTGGAGAACCCATCCAAAAGGGACTTATCAATATATGGATCCAGAATTACTTTTAACCTCTGAACTCACTCCAATGTGTGATGTTTACGCATTCGGAATAGTATTGTTAAGATTGATGACTACGAGACCAGACTGGTGGATAGTTCGTGAAGTGAGAACATGTCGTCTAGTAGATACTGTAAAATTGACATCATTATTTTATCCTTTGGCCATTTGTGCTGGCTGA 417 0.3933 MRIAAELRPAFIYLHTCKPHSIVHADVKPDNVILDANFVSKLGDFGLCRTLSNYEYISDNNTLFWRTHPKGTYQYMDPELLLTSELTPMCDVYAFGIVLLRLMTTRPDWWIVREVRTCRLVDTVKLTSLFYPLAICAG 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03575 138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Trre3g03575 138 PANTHER OS02G0152300 PROTEIN 1 117 - -
Trre3g03575 138 Gene3D Transferase(Phosphotransferase) domain 1 1 128 - -
Trre3g03575 138 Pfam Protein kinase domain 3 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03575 138 ProSiteProfiles Protein kinase domain profile. 1 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03575 138 SUPERFAMILY Protein kinase-like (PK-like) 2 130 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03575 Trre-Chr3 46123451 46123867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03575 1 134 U-box Gene Family AT2G45910 47.015 3.00e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre3g03575 Pkinase 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03575 - - gmx:100807515 164.851