Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03566 ATGTGTCTGTGTCTAAGATATGAATCGTTTGACATCCCCCGTGGCCGAGGACATGGAGGTGGTGATGTTGAATTGGGAGAATACGGAAGGAATTCAGGAGAGCTTAGCTTGGATACTTTCTTCAAAAAGGTTCAAGAGCTTGAGAAACAATATGCTAAGCTGGATAACCTTTTGAGAAAGCTTCAGGATGCTCATGAGGAGTCCAAAGCTGTTAGCAAAGCTCCTGCCATGAAGGCGATAAGGCAGAGAATGGATAAAGATGTCGATGAAGTTAAGAAAACTGCACTTTACTTAAAGACTAAAGTTGAAGAGCTCGACAAAGAGAATTTGGCTAATAGACAGAAACCTGGTTGCGGAAAAGGATCAGCTGTTGACCGGTCTAGAACAGCAACGACAATTAACTTGAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGACCCTGAGAACAGCCATTCACGAAGAATATCGTGACGTTGTTGAGAGACGTGTATTTACAGTAACGGGCAAAAGAGCTGATGAAGAGACAATTGACAGATTAATTGAGACCGGAGACAGTGAACAAATTTTCCAGAAGGCAATCCAGGAACAAGGACGAGGCCAGATAATGGACACTCTCGCAGAAATTCAAGAACGACACGAAGCAGTCAGAGATGTTGAGAGGAAATTGCTTGATTTACAACAGACATTTATGGATATTGCAGTGTTAGTTGATGCACAAGGAGACATGCTTAACAACATAGAATCGCAGGTTTCAAGTGCAGTAGATCATGTGCAGAGAGGTAATAATAATCTTATAAAGGCAAAGAAACTGCAAAAAAACTCAAGAAAATGGATGTGTATTGCCATAATGATATTTCTCATCATGGTTATAATCATTGTTGTTTCTGTCATTAAACCATGGGTTACTAATCAGGCATAG 924 0.4048 MCLCLRYESFDIPRGRGHGGGDVELGEYGRNSGELSLDTFFKKVQELEKQYAKLDNLLRKLQDAHEESKAVSKAPAMKAIRQRMDKDVDEVKKTALYLKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTINLKKKLKDKMAEFQTLRTAIHEEYRDVVERRVFTVTGKRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVERKLLDLQQTFMDIAVLVDAQGDMLNNIESQVSSAVDHVQRGNNNLIKAKKLQKNSRKWMCIAIMIFLIMVIIIVVSVIKPWVTNQA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03566 307 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 34 164 - -
Trre3g03566 307 SMART tSNARE_6 202 269 IPR000727 -
Trre3g03566 307 Coils Coil 37 74 - -
Trre3g03566 307 Gene3D - 34 161 - -
Trre3g03566 307 Pfam Syntaxin 40 242 IPR006011 GO:0016020
Trre3g03566 307 SMART SynN_4 32 158 IPR006011 GO:0016020
Trre3g03566 307 CDD SNARE_syntaxin1-like 206 268 - -
Trre3g03566 307 PANTHER SYNTAXIN 40 288 IPR045242 -
Trre3g03566 307 Gene3D - 197 300 - -
Trre3g03566 307 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
Trre3g03566 307 CDD SynN 37 194 IPR006011 GO:0016020
Trre3g03566 307 Pfam SNARE domain 243 295 IPR000727 -
Trre3g03566 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Trre3g03566 307 FunFam Syntaxin 132 200 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03566 Trre-Chr3 46033037 46035938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03566 9 303 SNARE and Associated Proteins AT3G03800 71.525 3.71e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03566 K08486 - gmx:100306329 502.671