LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g03566	ATGTGTCTGTGTCTAAGATATGAATCGTTTGACATCCCCCGTGGCCGAGGACATGGAGGTGGTGATGTTGAATTGGGAGAATACGGAAGGAATTCAGGAGAGCTTAGCTTGGATACTTTCTTCAAAAAGGTTCAAGAGCTTGAGAAACAATATGCTAAGCTGGATAACCTTTTGAGAAAGCTTCAGGATGCTCATGAGGAGTCCAAAGCTGTTAGCAAAGCTCCTGCCATGAAGGCGATAAGGCAGAGAATGGATAAAGATGTCGATGAAGTTAAGAAAACTGCACTTTACTTAAAGACTAAAGTTGAAGAGCTCGACAAAGAGAATTTGGCTAATAGACAGAAACCTGGTTGCGGAAAAGGATCAGCTGTTGACCGGTCTAGAACAGCAACGACAATTAACTTGAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGACCCTGAGAACAGCCATTCACGAAGAATATCGTGACGTTGTTGAGAGACGTGTATTTACAGTAACGGGCAAAAGAGCTGATGAAGAGACAATTGACAGATTAATTGAGACCGGAGACAGTGAACAAATTTTCCAGAAGGCAATCCAGGAACAAGGACGAGGCCAGATAATGGACACTCTCGCAGAAATTCAAGAACGACACGAAGCAGTCAGAGATGTTGAGAGGAAATTGCTTGATTTACAACAGACATTTATGGATATTGCAGTGTTAGTTGATGCACAAGGAGACATGCTTAACAACATAGAATCGCAGGTTTCAAGTGCAGTAGATCATGTGCAGAGAGGTAATAATAATCTTATAAAGGCAAAGAAACTGCAAAAAAACTCAAGAAAATGGATGTGTATTGCCATAATGATATTTCTCATCATGGTTATAATCATTGTTGTTTCTGTCATTAAACCATGGGTTACTAATCAGGCATAG	924	0.4048	MCLCLRYESFDIPRGRGHGGGDVELGEYGRNSGELSLDTFFKKVQELEKQYAKLDNLLRKLQDAHEESKAVSKAPAMKAIRQRMDKDVDEVKKTALYLKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTINLKKKLKDKMAEFQTLRTAIHEEYRDVVERRVFTVTGKRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVERKLLDLQQTFMDIAVLVDAQGDMLNNIESQVSSAVDHVQRGNNNLIKAKKLQKNSRKWMCIAIMIFLIMVIIIVVSVIKPWVTNQA	307

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g03566	307	FunFam	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group	34	164	-	-
	Trre3g03566	307	SMART	tSNARE_6	202	269	IPR000727	-
	Trre3g03566	307	Coils	Coil	37	74	-	-
	Trre3g03566	307	Gene3D	-	34	161	-	-
	Trre3g03566	307	Pfam	Syntaxin	40	242	IPR006011	GO:0016020
	Trre3g03566	307	SMART	SynN_4	32	158	IPR006011	GO:0016020
	Trre3g03566	307	CDD	SNARE_syntaxin1-like	206	268	-	-
	Trre3g03566	307	PANTHER	SYNTAXIN	40	288	IPR045242	-
	Trre3g03566	307	Gene3D	-	197	300	-	-
	Trre3g03566	307	SUPERFAMILY	t-snare proteins	36	262	IPR010989	GO:0016020\|GO:0016192

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g03566	Trre-Chr3	46033037	46035938	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g03566	9	303	SNARE and Associated Proteins	AT3G03800	71.525	3.71e-147	414

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g03566	K08486		-	gmx:100306329	502.671

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