Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03564 ATGGAAATTCAATTTGAGAAACCAAAGAAGAGTTTGAGACCAAAAAGAGGTAACAAATTCAAAGGGAGAAACAAAAAGATTGAAACAAAAAACAAGTTTGTTGGGGTGAGACAAAGACCATCAGGTAGATATGTTGCTGAGATTAAGGACACAACACAAAACATAAGAATGTGGCTTGGAACATTTGAAACAGCCGAGGAAGCTGCGAAAGCTTACGATGAAGCCGCGACACTTCTTCGCGGTTCCAACACTCGTACCAACTTTGTCGACACACATGTTTCCTACAATTCGCCTCTCGCTTCACGGATTCAAAATCTTCTTAACAACCAAGGAAAAGGTACCAAGCAACAACAAGAAGAAGATATGGATGTTAGAAGAAGCATCACCGATCGTGCTAACATGGCTAGTGGTACTACTAACAGGACTAGGGCCGGTAGCACCACTAACAATATTAGCACGACTCAAGGTACTGTTAAAAGTACTAGTGCTAGAAGTGTCGCTAACACTAATACTAATAATAGCGGTATTACTAATAGTAATAGTGCTAGCAGTGTGACTAGCACTAGTACGGTTATTAGTACTAATTCGAGCGATAACAGCAATCACGAAAACATTGAAAATACGATTTCTAGTGTGACCGTGATACAAAACAAAAAATTATTTGAGGATGCATATAGGCCAGATTTGAGCATTTTAAATGAGTATGAATCAAGTTTCAACAAGTCCAATGTTTCATGGGATTTTGGACCTATTTTTGATAATTTTCCTTTTGGTCAAGGGTTGGATATGAAAAACCAAGATGGAATATTGTGTGATATGGTTGACTTAGGGGTTTCAGAATTTGAAAGGATGAAAGTTGAAAGGCAAATATCAGCTTCACTTTATGCAATTAATGGTGTACAAGAGTACATGGAAACTGTTCAAGATTCCAATGAAGCTCCATGGAATCTTTCACCCTTGTGTTCATTTTTATGTTCAAACAAACAACATGTATGA 996 0.3765 MEIQFEKPKKSLRPKRGNKFKGRNKKIETKNKFVGVRQRPSGRYVAEIKDTTQNIRMWLGTFETAEEAAKAYDEAATLLRGSNTRTNFVDTHVSYNSPLASRIQNLLNNQGKGTKQQQEEDMDVRRSITDRANMASGTTNRTRAGSTTNNISTTQGTVKSTSARSVANTNTNNSGITNSNSASSVTSTSTVISTNSSDNSNHENIENTISSVTVIQNKKLFEDAYRPDLSILNEYESSFNKSNVSWDFGPIFDNFPFGQGLDMKNQDGILCDMVDLGVSEFERMKVERQISASLYAINGVQEYMETVQDSNEAPWNLSPLCSFLCSNKQHV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03564 331 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Trre3g03564 331 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Trre3g03564 331 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 290 - -
Trre3g03564 331 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g03564 331 MobiDBLite consensus disorder prediction 109 204 - -
Trre3g03564 331 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Trre3g03564 331 SMART rav1_2 32 97 IPR001471 GO:0003700|GO:0006355
Trre3g03564 331 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Trre3g03564 331 MobiDBLite consensus disorder prediction 131 204 - -
Trre3g03564 331 FunFam ethylene-responsive transcription factor RAP2-11 31 90 - -
Trre3g03564 331 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Trre3g03564 331 CDD AP2 32 88 IPR001471 GO:0003700|GO:0006355
Trre3g03564 331 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03564 Trre-Chr3 46026265 46027260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03564 223 325 AP2-EREBP Transcription Factor Family AT5G19790 30.702 1.22e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g03564 AP2 5.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03564 K09286 - gmx:100782886 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02625 13 24513715 24514530 Trre3g03564 3 46026265 46027260 PCT