Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03548 ATGGAAAACATTATAAGATTTTCACTCGGGTTTTCTCTTCTTTGTATCCTCTACCTTGCTGCCACTGCATATGAACCAGGGATGTGTGCAAGGCGGCTGACATACTACATGTATCAGCAACAACATAGACCCGAGGATAACAACATCGAGTTTTGGAGGAAGTTTGTCGCTGAATATTTTGCTCCCAATGCGAAGAAGAAATGGTGTGTTTCTATGTATGGAAGTAGCAGTCAAACAACCGGAGTTTTCCCTCAGGATGGATGGCACTGCGAAATATGTAATCACAAACCTGGCCGTGGGTTTGAAGCAACTGTTGAGGTTCTTCCCAGACTTTTCAAGATAAAGTATGAAAGTGGTACTCTGGAAGAGCTACTTTATGTTGACATGCCCCGTGAATATCATAATTCCTCGGGCCAAATTGTTCTAGACTATGCAAAAGCGATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTCGAATAGTTTTCTCTCCATACCTGAAGGTTAGTCTGATTGGAACGGTTGCTCAGAAATACCAGTCTTTAACTCAAAATACAACGCCGAATATATCTGCTCCAGAGTTACAAAACAATTGCAATATCCCTTCTTTTTGGTTGTTGACCATCATTTTGAAAGAACTGCTAATCAAAAGATCTGATACCACTGCAGAAGAGGCTGAATTACCTCGCACCTATCCTATTCGATTGGCCTGGGATCTTGCAAAGCAGGCTTTTGATGAAGCAATTTCGGAGCTTAACACCTTGAATAAGGAGTCTGACAAAGATAGTACGTCGATCATGCAACTTCTGAGGGACAATTTGACTCTTTGGAATTCTGACATCCCAGAAGATGGAGAAAAGTCCCAGAAAGCAAACGACACTGCTAAGCTTGGTGGAGGTGATGATGTAGAGTGA 930 0.4194 MENIIRFSLGFSLLCILYLAATAYEPGMCARRLTYYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSSSQTTGVFPQDGWHCEICNHKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPYLKVSLIGTVAQKYQSLTQNTTPNISAPELQNNCNIPSFWLLTIILKELLIKRSDTTAEEAELPRTYPIRLAWDLAKQAFDEAISELNTLNKESDKDSTSIMQLLRDNLTLWNSDIPEDGEKSQKANDTAKLGGGDDVE 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03548 309 MobiDBLite consensus disorder prediction 285 309 - -
Trre3g03548 309 Pfam LIM-domain binding protein 32 187 IPR029005 -
Trre3g03548 309 MobiDBLite consensus disorder prediction 288 309 - -
Trre3g03548 309 SMART 1433_4 122 296 IPR023410 -
Trre3g03548 309 Gene3D - 223 299 IPR036815 -
Trre3g03548 309 PRINTS 14-3-3 protein zeta signature 229 255 IPR000308 -
Trre3g03548 309 PRINTS 14-3-3 protein zeta signature 256 285 IPR000308 -
Trre3g03548 309 Pfam 14-3-3 protein 241 283 IPR023410 -
Trre3g03548 309 PANTHER LIM DOMAIN-BINDING PROTEIN 22 173 IPR029005 -
Trre3g03548 309 SUPERFAMILY 14-3-3 protein 232 291 IPR036815 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03548 Trre-Chr3 45830362 45833770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03548 24 206 C2H2 Transcription Factor Family AT1G43850 74.272 6.93e-98 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03548 - - gmx:100799771 346.28