Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03530 ATGGATATTTGCAACAATGTATCAGTTTCAGGAGAGTTCTCTACCCTTGATGACCTTTTTGCAACTCACAACAAGGAAGTGGATTTTGGGATGGAGTGGTTGTCAGTGTTTGTTGAAGAATGTTTTTCAAGCAAACCAAGTTGTATCATAGCACCTTCTAGTTCTAATGTTCAAATCCAAAAAACTACATGTACCAATACAAAACCTTCAAACACAATGCAAAATCCTCAACAACAAAATCAATCTTATTTGCAAAATTTTGTTGTTCCTGGAAAAGCAAGAAGCAAAAGGAAAAGACTTTCAGCTCCTAGAACCAAAATTTGGTCACATAATTCACACATTTTAAGTGATGCTATGTCTTTAGATCCTCCTTTGTTGAAACAATCTTATTGGTTAGCCGATAGTGAACTCATTGCTCCTAAAATGAAAAATGAGCAAAAAGTCGTTGCAGTTGCACGCAGAGATACCTCAATTTACCAGAAGAAAAAAAGGGTAAAGCTTGAAATTAAGATTGAAAATAGTGATGATAAAAATAATTGTGATGATGATGAACATGTTCCAAATGCAAGAAGGTGCACTCATTGTTTGTCTCATAGGACCCCACAATGGAGGGCAGGACCATTGGGACCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTTAGCTACTTGCATTCAAATTCACACAAGAAAGTTTTGGAGATGAGAATGCAATCTATTAATTAG 780 0.3679 MDICNNVSVSGEFSTLDDLFATHNKEVDFGMEWLSVFVEECFSSKPSCIIAPSSSNVQIQKTTCTNTKPSNTMQNPQQQNQSYLQNFVVPGKARSKRKRLSAPRTKIWSHNSHILSDAMSLDPPLLKQSYWLADSELIAPKMKNEQKVVAVARRDTSIYQKKKRVKLEIKIENSDDKNNCDDDEHVPNARRCTHCLSHRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMQSIN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03530 259 PANTHER GATA TRANSCRIPTION FACTOR 27 258 - -
Trre3g03530 259 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 249 - -
Trre3g03530 259 ProSitePatterns GATA-type zinc finger domain. 192 217 IPR000679 GO:0006355|GO:0043565
Trre3g03530 259 Pfam GATA zinc finger 192 226 IPR000679 GO:0006355|GO:0043565
Trre3g03530 259 SMART GATA_3 186 240 IPR000679 GO:0006355|GO:0043565
Trre3g03530 259 FunFam GATA transcription factor 182 259 - -
Trre3g03530 259 ProSiteProfiles GATA-type zinc finger domain profile. 186 222 IPR000679 GO:0006355|GO:0043565
Trre3g03530 259 CDD ZnF_GATA 191 238 IPR000679 GO:0006355|GO:0043565
Trre3g03530 259 Gene3D - 183 257 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03530 Trre-Chr3 45633586 45635226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03530 2 256 C2C2-Gata Transcription Factor Family AT4G32890 38.931 1.91e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre3g03530 GATA 2.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03530 - - pvu:PHAVU_004G079200g 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02660 13 24942747 24943967 Trre3g03530 3 45633586 45635226 PCT