Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03527 ATGGAGAATGAGCAATGGTGCAGCATATGCTCTAAAATGGTGAGTCCAATGATTGAATCAAGAAACAAATGTCCATTTTGTGAAACACAATTTGGTGTAGAAATGGAAAATCTAAGAGACCATAATAATGATGCTATTGATTTAAGGTCAGCTTGGGTTTTCTCACTTTATGCACCAATTTTTCTTGGTTTGATGAATGCTTTTAGTCCTTCTCTAGCTACAATTTCTTCACAAGAAAGTAGCACATCAAGAAATGAAGAAAATGTTGAACAAGAGAGAGGTAATTACAATGAACTTGTAATTGGAAGAAGGAGAAGAACTTCAACTTACATGATGCATTTATTTAGAGGACTTCATGTTAGAATGGTTTCTGAAAATGAAAACATAGAACAAAATAGTAACAATGAGAATAATAATAACAATACTACCAATAATAATAGTATATTTGTTATTGATCCATTCAATGAAGGTGCATTAATTGTGAGAGGTCCTAATTTGAATCATACAAATAGGTCAAATGAAAATAATAGTATTAATGCTAATATTAATACTACTATTGGATCTTTGAATGATTTTGTGGATGGAAGTGGATTTGATTTGTTGCTACAACATTTGGCACAAATTAACCCTAGTGGTTATGCTAGTGTGAATCCTCCAACAAAGAAGGAAGCAATTGAAGAAATGGAAAATGTGATTAATGATGAGAAATTGCAATGTACTATATGTTTGGAAGATGTTGAGATTGGAAGTATAGCTAAAGAAATGCCATGTAAGCATAAATTTCATGATGATTGTATTGTATCATGGCTTAAACTACATAGTTCTTGTCCAGTTTGTAGGTTTCAAATGCCTTGTGAGGATTCAAATGTTTTGGCTAATTTGGAAAATGGAAATAGGGAGAATCAAAATAATGAGGTTGTGAGAGGTAGAAATGGAAGGAGGAATTGGTTTCCGGTTCTTCAATCTTTTAATAATTTCCTTCCTTTTCCTTGA 993 0.3202 MENEQWCSICSKMVSPMIESRNKCPFCETQFGVEMENLRDHNNDAIDLRSAWVFSLYAPIFLGLMNAFSPSLATISSQESSTSRNEENVEQERGNYNELVIGRRRRTSTYMMHLFRGLHVRMVSENENIEQNSNNENNNNNTTNNNSIFVIDPFNEGALIVRGPNLNHTNRSNENNSINANINTTIGSLNDFVDGSGFDLLLQHLAQINPSGYASVNPPTKKEAIEEMENVINDEKLQCTICLEDVEIGSIAKEMPCKHKFHDDCIVSWLKLHSSCPVCRFQMPCEDSNVLANLENGNRENQNNEVVRGRNGRRNWFPVLQSFNNFLPFP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03527 330 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Trre3g03527 330 FunFam E3 ubiquitin-protein ligase RNF181 209 286 - -
Trre3g03527 330 Pfam Ring finger domain 238 280 IPR001841 -
Trre3g03527 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 284 - -
Trre3g03527 330 SMART ring_2 239 279 IPR001841 -
Trre3g03527 330 Coils Coil 126 146 - -
Trre3g03527 330 SUPERFAMILY RING/U-box 227 285 - -
Trre3g03527 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 286 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03527 Trre-Chr3 45593592 45594584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03527 130 306 C3H Transcription Factor Family AT1G26800 29.213 1.13e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03527 - K11982 cam:101512035 464.922