Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03525 ATGTACTTCCACCATCAGCAACAACAAGCAAGGAACATGCATGCTTTAAGGATGCACATGCAAGGAAATGGAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACACCAGATCTTCATGAACGTTTCATTGAAGCAGTCAATCAACTTGGAGGATCAGATAAAGCTACACCTAAAACAGTATTGAAACTAATGGGAATTCCTGGACTTACATTATACCATTTAAAAAGTCACCTACAGAAGTACAGGATTAGTAGACATGGCCCACATGGGAATGGACAAACTAGCATTAGCAACAGTAAAATTGAAGTTATAGAAAGCAGAATGTCAGAATCAAGTGGAATTCATATGAAAGATTTAAGCATAGGACTCCAAACAAACAAAAATTCAGAAATAAATGAAGCATTAAATATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAGCTTGAGGTACAACGACACTTACAGTTAAGGATAGAGGCTCAAGGAAAATACCTTCAATCAGTTCTTGAAAAAGCTAAGGAGACACTAGGAAGTCAAAATTTAGGTACTATGGGACTTGATGCTGCAAAAGTTCAACTATCTGAATTAGCATCAAGAGTATCAACTGAGAACCTTGATACTAAATTTTCAGAACTAAAAGAATTGAATGTACTTTGGCCTCAACAAACACATGAAAGTGAAGCCATTGATTATTCAATATCAAGTTTCTTAACTAATAGTAAGGACTCTCAAAGAGATCAAGAAATACATAACAAGGGCATGAATTTTAGAGCCTATAATGGCACATTTTGTGAAGAAGTGAAGGAGAATATGATGTTTTTTTCCTCATCAAATGTTAAAGAACTAGAGGGATCGGGTGAATTACCAAAACGAACTTCAAGCCTCTTATCCATGAATATAGGAGTTCATGAAGGAGAAAACTTTTGGAGAAGAAATAATTCAAAGGAAGATTTAAAGAGTGAAGAATGGAAAAGAAGAAATAGTATTGAAACTAGTGGAGTTCAACTTAAATTGAATAGTAACAAAATTTCTCAAGATTATAGATTGGCTAACTTTGAAGTGAAATTGGACTTGAATTCTCATGATGACAATGATGCCTCTCAATGCCAAAAATTTGACTTGAATGGTTTCAGCTGGAATTGCTAG 1167 0.3479 MYFHHQQQQARNMHALRMHMQGNGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGSDKATPKTVLKLMGIPGLTLYHLKSHLQKYRISRHGPHGNGQTSISNSKIEVIESRMSESSGIHMKDLSIGLQTNKNSEINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAKETLGSQNLGTMGLDAAKVQLSELASRVSTENLDTKFSELKELNVLWPQQTHESEAIDYSISSFLTNSKDSQRDQEIHNKGMNFRAYNGTFCEEVKENMMFFSSSNVKELEGSGELPKRTSSLLSMNIGVHEGENFWRRNNSKEDLKSEEWKRRNSIETSGVQLKLNSNKISQDYRLANFEVKLDLNSHDDNDASQCQKFDLNGFSWNC 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03525 388 Pfam MYB-CC type transfactor, LHEQLE motif 136 181 IPR025756 -
Trre3g03525 388 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Trre3g03525 388 Gene3D - 34 92 - -
Trre3g03525 388 FunFam Myb family transcription factor 34 92 - -
Trre3g03525 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Trre3g03525 388 Pfam Myb-like DNA-binding domain 37 88 IPR001005 -
Trre3g03525 388 Coils Coil 138 158 - -
Trre3g03525 388 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 267 IPR044848 GO:0003700
Trre3g03525 388 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 89 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03525 Trre-Chr3 45557582 45560887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03525 67 387 G2-like Transcription Factor Family AT3G04030 45.349 4.26e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre3g03525 Myb_DNA-binding 1.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03525 - - psat:127126075 592.423