Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03524 ATGTACTTCCACCATCAGCAACAACAAGCAAGGAACATGCATGCTTTAAGGATGCACATGCAAGGAAATGGAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACACCAGATCTTCATGAACGTTTCATTGAAGCAGTCAATCAACTTGGAGGATCAGATAAAGCTACACCTAAAACAGTATTGAAACTAATGGGAATTCCTGGACTTACATTATACCATTTAAAAAGTCACCTACAGAAGTACAGGATTAGTAGACATGGCCCACATGGGAATGGACAAACTAGCATTAGCAACAGTAAAATTGCTACACCAACCACAGAAGTTATAGAAAGCAGAATGTCAGAATCAAGTGGAATTCATATGAAAGATTTAAGCATAGGACTCCAAACAAACAAAAATTCAGAAATAAATGAAGCATTAAATATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAGCTTGAGGTACAACGACACTTACAGTTAAGGATAGAGGCTCAAGGAAAATACCTTCAATCAGTTCTTGAAAAAGCTAAGGAGACACTAGGAAGTCAAAATTTAGGTACTATGGGACTTGATGCTGCAAAAGTTCAACTATCTGAATTAGCATCAAGAGTATCAACTGAGAACCTTGATACTAAATTTTCAGAACTAAAAGAATTGAATGTACTTTGGCCTCAACAAACACATGAAAGTGAAGCCATTGATTATTCAATATCAAGTTTCTTAACTAATAGTAAGGACTCTCAAAGAGATCAAGAAATACATAACAAGGGCATGAATTTTAGAGCCTATAATGGCACATTTTGTGAAGAAGTGAAGGAGAATATGATGTTTTTTTCCTCATCAAATGTTAAAGAACTAGAGGGATCGGGTGAATTACCAAAACGAACTTCAAGCCTCTTATCCATGAATATAGGAGTTCATGAAGGAGAAAACTTTTGGAGAAGAAATAATTCAAAGGAAGATTTAAAGAGTGAAGAATGGAAAAGAAGAAATAGTATTGAAACTAGTGGAGTTCAACTTAAATTGAATAGTAACAAAATTTCTCAAGATTATAGATTGGCTAACTTTGAAGTGAAATTGGACTTGAATTCTCATGATGACAATGATGCCTCTCAATGCCAAAAATTTGACTTGAATGGTTTCAGCTGGAATTGCTAG 1182 0.3503 MYFHHQQQQARNMHALRMHMQGNGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGSDKATPKTVLKLMGIPGLTLYHLKSHLQKYRISRHGPHGNGQTSISNSKIATPTTEVIESRMSESSGIHMKDLSIGLQTNKNSEINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAKETLGSQNLGTMGLDAAKVQLSELASRVSTENLDTKFSELKELNVLWPQQTHESEAIDYSISSFLTNSKDSQRDQEIHNKGMNFRAYNGTFCEEVKENMMFFSSSNVKELEGSGELPKRTSSLLSMNIGVHEGENFWRRNNSKEDLKSEEWKRRNSIETSGVQLKLNSNKISQDYRLANFEVKLDLNSHDDNDASQCQKFDLNGFSWNC 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03524 393 Gene3D - 34 92 - -
Trre3g03524 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 272 IPR044848 GO:0003700
Trre3g03524 393 Coils Coil 143 163 - -
Trre3g03524 393 FunFam Myb family transcription factor 34 92 - -
Trre3g03524 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Trre3g03524 393 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 89 IPR006447 GO:0003677
Trre3g03524 393 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Trre3g03524 393 Pfam Myb-like DNA-binding domain 37 88 IPR001005 -
Trre3g03524 393 Pfam MYB-CC type transfactor, LHEQLE motif 141 186 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03524 Trre-Chr3 45557582 45560887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03524 67 392 G2-like Transcription Factor Family AT3G04030 45.376 2.42e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre3g03524 Myb_DNA-binding 1.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03524 - - psat:127126075 601.668