Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03519 ATGGAAGAACCTATTATGGATAACAAAAGTGATGAAGCTCTTGATTTACCTGCTGGTTTCAGATTCCACCCTACTGATGATGAAATCATTACTTGTTATTTAATTAATAAGGTTTTGAATATTAACTTTAGTGCAATTGCAATTGGTGAAGCTGATTTGAATAAGTGTGAGCCATGGGATTTACCAAAGAAAGCTAAGATGGGTGAGAAAGATTGGTATTTCTTTTGTCAAAGAGATAGGAAGTATCCAACAGGAACAAGAACTAATAGAGCAACTGAATCTGGATATTGGAAAGCAACTGGAAAAGATAAAGAGATCTACAAAGGGAAAACTAACCAACTTGTTGGAATGAAGAAAACTCTTGTGTTCTATAAAGGTAGAGCTCCAAGAGGAGAGAAAACTAATTGGGTTATGCATGAATTTAGATTGGATGGAAAATTAGCAACTTGCAACCTTCCTAAGGATGCTAAGGATGAATGGGTTGTGTCAAGGATTTTCAACAAGAACATCAACAATAATGAAGTTAAAAGGACTAATTCAATTTCCAATCTTTTAAGGATAAACTCAATAAGTGATGATTTATTGGATTTTTCTTCACTTCCACCTCTTGTTGATCCTCCTTTTAGCAACAACACTATTGATCATAATCATGACTTCAAAGGCACCAATTCATCACCTTCATCATCAAATGGTTACTATTTTCCAAGCTACTTAATCAACAATAATGATATTAATCTCACAAATCATCATGTCACAAACCAAGGAAATTTCAATAATCCAATGCAAAAAAGCACATTTTCATCACATCAACCTCAAATCCAAAATCCAAAACCACCTTTGAACCAAAATATGTTATCAAATTTATATTCTTATATGAATCAAGGGAACAATAATAATAATAGCAATGGTTACATTTATGGATTGGAAAATAAAGAGTGCAAGATGGAGCAATTCTCTACCAACAATTCTATGGTAAGTGTTTCACAAGACACATGTTTGAGCAATGACATAAACAATGACACATCTTCTGTGGTCTCAAAGCAAGAAAATATGGGAAGGAATATAACATTGTACGAAGAACTTGGGGGCCCTTCATCAATTGGTCCCCTCTCAAATTTTGAGTATTTGTGGGATAACTATTGA 1143 0.336 MEEPIMDNKSDEALDLPAGFRFHPTDDEIITCYLINKVLNINFSAIAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKTNQLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGKLATCNLPKDAKDEWVVSRIFNKNINNNEVKRTNSISNLLRINSISDDLLDFSSLPPLVDPPFSNNTIDHNHDFKGTNSSPSSSNGYYFPSYLINNNDINLTNHHVTNQGNFNNPMQKSTFSSHQPQIQNPKPPLNQNMLSNLYSYMNQGNNNNNSNGYIYGLENKECKMEQFSTNNSMVSVSQDTCLSNDINNDTSSVVSKQENMGRNITLYEELGGPSSIGPLSNFEYLWDNY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03519 380 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Trre3g03519 380 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Trre3g03519 380 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 293 - -
Trre3g03519 380 FunFam NAC domain-containing protein 100-like 25 172 - -
Trre3g03519 380 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Trre3g03519 380 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03519 Trre-Chr3 45490708 45492537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03519 2 378 NAC Transcription Factor Family AT5G18270 48.438 9.62e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre3g03519 NAM 4.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03519 - - psat:127126114 468.003