Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03518 ATGTTGAAACACTCCGGCCGCCATTCTTCGCCGCCGGAGTCGTTCGCCGACAAGATCTACCAATTCCGCGGCGCCTTTCTAATGGTGGTACTCCCTCTCCTCCTCGTCACACTCATACTTTACGCCATGCCTTCCACTTCTTCCAATGAATCCATCGAAGATTACGCCCTTACGCACCGTAAGATTTCTCCCGATCGTCTACCGTCAGATTCTTTTGCCGTCATTTTTGACGCTGGTAGCTCCGGTAGCCGCGTTCATGTCTTTCGATTCGACCGGAACCTTGATCTTGTTCACATTGGTAAAGATCTTGAGGTTTTCTTGCAGCTTAAACCTGGTTTGAGTGCTTATGCACAAGATCCACAACAGGCAGCGGAATCCCTTATTTCTCTTTTGGATAAAGCGGAAAGTGTTGTTCCTTTGGAGTTTCGCTCCATGACACCAGTTAGAGTTGGGGCAACTGCAGGATTGAGGGCTTTGGAAGGGGATGCTTCTGATAGGATCTTGCAAGCGGTCCGAGATTTGCTTAAGCAAAGAAGTACTCTAAAATCCGAGCCTAATGCGGTTGCTGTGCTAGATGGAAACCAAGAAGGTGCTTTTCAATGGGTGACTATTAATTATCTATTGGGAAAGTTGGGAAGAGATTATTCAGACACTGTTGGAGTAGTTGATCTTGGAGGTGGATCTGTTCAAATGGCATATGCAATCTCAGAGACAAGTGCTGCCAAGGCTCCAAAAGTACCGGATGGAGAAGACCCTTATGTCAAGGAGATGTTCCTAAGGGGAAGGAAATATTACCTCTATGTTCACAGTTACTTGTGCTATGGTTTACTAGCAGCTCGTGCAGAGATCTTAAAGCATTATGACAATTCTGGAAACCCTTGCATCTTAGATGGCTATGAAGGATCTTACAAATACGGAGGAAAGTCATTTAATGCCACATCCTCTGGTTCAAGCTTCAATGAATGCAAAAGTATAGCTCTTAAGGCTCTCAAGGTTAATGAGTCAACATGTACACATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGTGGCGGTGATGGACAGAAGAACCTTTTTGTCGCCTCATTTTTCTTTGATCGTGCAGCCGAGGTTGGTTTTGCTGATCCAAAGTCACCCGTCGCAAAAGTTCGTCCTGTGGATTTTGAGGATGCAGCTAAGAAAGCTTGTCAAACAGAACTCGAGGATGCCAAATCCACTTATCCACACGTTGAGGATGGGAACCTTCCATATTTATGCATGGATCTTGTATACCAGTATACATTGCTTGTTGTTGGATTCGGTCTAGATCCATTGCAGCAGATTACATTAGTGAAGCAAGTTAAATATCATGATTCTCTTGTTGAAGCTGCATGGCCCCTAGGCAGCGCCATAGAAGCTGTATCATCTATACGATGA 1419 0.4503 MLKHSGRHSSPPESFADKIYQFRGAFLMVVLPLLLVTLILYAMPSTSSNESIEDYALTHRKISPDRLPSDSFAVIFDAGSSGSRVHVFRFDRNLDLVHIGKDLEVFLQLKPGLSAYAQDPQQAAESLISLLDKAESVVPLEFRSMTPVRVGATAGLRALEGDASDRILQAVRDLLKQRSTLKSEPNAVAVLDGNQEGAFQWVTINYLLGKLGRDYSDTVGVVDLGGGSVQMAYAISETSAAKAPKVPDGEDPYVKEMFLRGRKYYLYVHSYLCYGLLAARAEILKHYDNSGNPCILDGYEGSYKYGGKSFNATSSGSSFNECKSIALKALKVNESTCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEVGFADPKSPVAKVRPVDFEDAAKKACQTELEDAKSTYPHVEDGNLPYLCMDLVYQYTLLVVGFGLDPLQQITLVKQVKYHDSLVEAAWPLGSAIEAVSSIR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03518 472 Pfam GDA1/CD39 (nucleoside phosphatase) family 69 470 IPR000407 GO:0016787
Trre3g03518 472 FunFam Apyrase 1 192 449 - -
Trre3g03518 472 CDD NBD_sugar-kinase_HSP70_actin 74 233 - -
Trre3g03518 472 Gene3D Exopolyphosphatase. Domain 2 192 449 - -
Trre3g03518 472 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 16 470 IPR000407 GO:0016787
Trre3g03518 472 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 191 206 IPR000407 GO:0016787
Trre3g03518 472 Gene3D - 72 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03518 Trre-Chr3 45462361 45469350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03518 6 470 Calmodulin-binding Proteins AT3G04080 67.308 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03518 K14641 - gmx:100804818 757.288