Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03517 ATGGACCTCGAATCCACCAAAATGTTGAAACACTCCGGCCGCCATTCTTCGCCGCCGGAGTCGTTCGCCGACAAGATCTACCAATTCCGCGGCGCCTTTCTAATGGTGGTACTCCCTCTCCTCCTCGTCACACTCATACTTTACGCCATGCCTTCCACTTCTTCCAATGAATCCATCGAAGATTACGCCCTTACGCACCGTAAGATTTCTCCCGATCGTCTACCGTCAGATTCTTTTGCCGTCATTTTTGACGCTGGTAGCTCCGGTAGCCGCGTTCATGTCTTTCGATTCGACCGGAACCTTGATCTTGTTCACATTGGTAAAGATCTTGAGGTTTTCTTGCAGCTTAAACCTGGTTTGAGTGCTTATGCACAAGATCCACAACAGGCAGCGGAATCCCTTATTTCTCTTTTGGATAAAGCGGAAAGTGTTGTTCCTTTGGAGTTTCGCTCCATGACACCAGTTAGAGTTGGGGCAACTGCAGGATTGAGGGCTTTGGAAGGGGATGCTTCTGATAGGATCTTGCAAGCGGTCCGAGATTTGCTTAAGCAAAGAAGTACTCTAAAATCCGAGCCTAATGCGGTTGCTGTGCTAGATGGAAACCAAGAAGGTGCTTTTCAATGGGTGACTATTAATTATCTATTGGGAAAGTTGGGAAGAGATTATTCAGACACTGTTGGAGTAGTTGATCTTGGAGGTGGATCTGTTCAAATGGCATATGCAATCTCAGAGACAAGTGCTGCCAAGGCTCCAAAAGTACCGGATGGAGAAGACCCTTATGTCAAGGAGATGTTCCTAAGGGGAAGGAAATATTACCTCTATGTTCACAGTTACTTGTGCTATGGTTTACTAGCAGCTCGTGCAGAGATCTTAAAGCATTATGACAATTCTGGAAACCCTTGCATCTTAGATGGCTATGAAGGATCTTACAAATACGGAGGAAAGTCATTTAATGCCACATCCTCTGGTTCAAGCTTCAATGAATGCAAAAGTATAGCTCTTAAGGCTCTCAAGGTTAATGAGTCAACATGTACACATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGTGGCGGTGATGGACAGAAGAACCTTTTTGTCGCCTCATTTTTCTTTGATCGTGCAGCCGAGGTTGGTTTTGCTGATCCAAAGTCACCCGTCGCAAAAGTTCGTCCTGTGGATTTTGAGGATGCAGCTAAGAAAGCTTGTCAAACAGAACTCGAGGATGCCAAATCCACTTATCCACACGTTGAGGATGGGAACCTTCCATATTTATGCATGGATCTTGTATACCAGTATACATTGCTTGTTGTTGGATTCGGTCTAGATCCATTGCAGCAGATTACATTAGTGAAGCAAGTTAAATATCATGATTCTCTTGTTGAAGCTGCATGGCCCCTAGGCAGCGCCATAGAAGCTGTATCATCTATACGATGA 1440 0.4507 MDLESTKMLKHSGRHSSPPESFADKIYQFRGAFLMVVLPLLLVTLILYAMPSTSSNESIEDYALTHRKISPDRLPSDSFAVIFDAGSSGSRVHVFRFDRNLDLVHIGKDLEVFLQLKPGLSAYAQDPQQAAESLISLLDKAESVVPLEFRSMTPVRVGATAGLRALEGDASDRILQAVRDLLKQRSTLKSEPNAVAVLDGNQEGAFQWVTINYLLGKLGRDYSDTVGVVDLGGGSVQMAYAISETSAAKAPKVPDGEDPYVKEMFLRGRKYYLYVHSYLCYGLLAARAEILKHYDNSGNPCILDGYEGSYKYGGKSFNATSSGSSFNECKSIALKALKVNESTCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEVGFADPKSPVAKVRPVDFEDAAKKACQTELEDAKSTYPHVEDGNLPYLCMDLVYQYTLLVVGFGLDPLQQITLVKQVKYHDSLVEAAWPLGSAIEAVSSIR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03517 479 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 198 213 IPR000407 GO:0016787
Trre3g03517 479 CDD NBD_sugar-kinase_HSP70_actin 81 240 - -
Trre3g03517 479 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 23 477 IPR000407 GO:0016787
Trre3g03517 479 Gene3D Exopolyphosphatase. Domain 2 199 456 - -
Trre3g03517 479 FunFam Apyrase 1 199 456 - -
Trre3g03517 479 Pfam GDA1/CD39 (nucleoside phosphatase) family 76 477 IPR000407 GO:0016787
Trre3g03517 479 Gene3D - 79 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03517 Trre-Chr3 45462340 45469350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03517 13 477 Calmodulin-binding Proteins AT3G04080 67.308 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03517 K14641 - gmx:100804818 757.288