Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03510 ATGAACAACAACAACATGGTTGATTCTAACCCAATTAACCATGACCCATCAACGATTCAATCGCTCTCAACCGATTCACCTAATGATGCAGAGAATGATGTGAAGTTGCATTCTAAGGACCAGAGAGATGCTCTTCCAGGTGAGCCGATGTGTATTGTATGTGGCCGCTATGGTGAGTATATATGTGATGAAACTGACGATGATGTTTGCAGTTTGGAATGTAAACAATCGGTACTATGTCGAATTTCCAAATCCTCATCTCGTGTTGGAGGTCTTTCGCCACCTAAAAAACTGCCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGAAAACAAATCCGGAACGGCGTCTTTAGGAGGTGATCAGATTCAGGCTAAATTGCTTCGAAAGAAACTTGACATTCATGTGAAGGGTGTTGTTTCGGCACCGGTTTTGTCGTTTACTTCATGTAACCTCCCTGACAAACTCCTCCACAACATCGAAGCAGCTGGATATGAGATGCCTACGCCTGTCCAAATGCAAGCAATCCCTGCTGCTTCGATGGGGAAGAACATGCTTGTTTTGGCCGATACGGGATCTGGAAAGTCTGCTTCGTTTCTTATTCCAATAATTTCTCGTTGTGTAAGTCATCGTTTGACTTATGTTTCTGATAATAAAAAGCCTTTAGCTATGGTGTTAACACCTACAAGAGAGCTCAGTATACAGGTTGAAGAGCACGCAAAATTGCTCGGAAAAGGGTTACCGTTTAAAACCGCACTTGTGGTTGGTGGTGATGCAATGGCTAGACAACTCTACCGTATTCAACAAGGAGTCGAATTGATTGTTGGAACACCAGGAAGGCTCGTTGATCTTTTAACGAAGCACGAGATCGACTTAGATGACATAACGACATTTGTTATCGATGAGGTGGACTGCATGCTGCAAAGGGGTTTTCGAGATCATGTCTTACAGATATTCACAGCTTTGTCACAACCTCAGGTCTTAATGTTTTCCGCAACAATGTCCGATGATTTAGAGAAAATGGCGAACTCTTTGGCAACGGATACAGTGGTGATAACTGTCGGCGAACCTAACAGACCAAATAAAGCTGTGAAGCAGCTAGCTATTTGGGTCGAATCGAAACAAAAAAAGCAGAAACTGTTTGACATTTTAACAAGCCCGAAACATTTTAAGCCACCTGTTGTAATATACGTCAGCTCGAGACTTGGCGCAGATCTCTTGGCAAATGCAATTACAGTTTCAACAGGAATTAAAGCTATTTCAATTCACGGTGAGAAGTCCATGACCGAAAGGAGAGATATAATGAAGTCATTTATGGTCGGTGAGTTCCTGGTAGTTGTGGCTACCGGAGTTTTAGGTAGAGGGGTTGATCTATTGGGCGTAAAACAAGTGATTGTATTCGACATGCCGAATTCCATTAAGGAATATGTACATCAAATAGGAAGAGCTTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATGACGAGAATAAGAATGTTTGTGCCGAGCTAGTTGATGTACTAAAGTCGGGTGCAGCGGCTATACCTCGGGAGCTTATTAATTCACAGTATACCACAAGAGTTTTCTCTGGTGGCAAAGGTTCAAAGAAGAGAAAGTACAGATGA 1638 0.4243 MNNNNMVDSNPINHDPSTIQSLSTDSPNDAENDVKLHSKDQRDALPGEPMCIVCGRYGEYICDETDDDVCSLECKQSVLCRISKSSSRVGGLSPPKKLPAADECFYVRDTENKSGTASLGGDQIQAKLLRKKLDIHVKGVVSAPVLSFTSCNLPDKLLHNIEAAGYEMPTPVQMQAIPAASMGKNMLVLADTGSGKSASFLIPIISRCVSHRLTYVSDNKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDDITTFVIDEVDCMLQRGFRDHVLQIFTALSQPQVLMFSATMSDDLEKMANSLATDTVVITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILTSPKHFKPPVVIYVSSRLGADLLANAITVSTGIKAISIHGEKSMTERRDIMKSFMVGEFLVVVATGVLGRGVDLLGVKQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENKNVCAELVDVLKSGAAAIPRELINSQYTTRVFSGGKGSKKRKYR 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03510 545 Gene3D - 355 529 IPR027417 -
Trre3g03510 545 Gene3D - 30 88 - -
Trre3g03510 545 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 142 527 - -
Trre3g03510 545 Pfam DEAD/DEAH box helicase 170 341 IPR011545 GO:0003676|GO:0005524
Trre3g03510 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 356 IPR027417 -
Trre3g03510 545 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 527 IPR001650 -
Trre3g03510 545 SMART ultradead3 165 368 IPR014001 -
Trre3g03510 545 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 353 IPR014001 -
Trre3g03510 545 MobiDBLite consensus disorder prediction 1 29 - -
Trre3g03510 545 Pfam HIT zinc finger 49 75 IPR007529 -
Trre3g03510 545 CDD SF2_C_DEAD 365 497 - -
Trre3g03510 545 MobiDBLite consensus disorder prediction 1 41 - -
Trre3g03510 545 Pfam Helicase conserved C-terminal domain 380 488 IPR001650 -
Trre3g03510 545 SMART helicmild6 406 488 IPR001650 -
Trre3g03510 545 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 146 174 IPR014014 GO:0003724
Trre3g03510 545 Gene3D - 118 354 IPR027417 -
Trre3g03510 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 501 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03510 Trre-Chr3 45354805 45357815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03510 147 508 Eukaryotic Initiation Factors Gene Family AT1G72730 32.970 2.60e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03510 K19466 - gmx:100781473 818.535