Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03507 ATGAAGGAGAACAGAGTTAGTAATATTTATATGTTGGATGAATTGGAATCTAGATTAGCCTCGTCTTCTGATGCCGAAGTTAAAACACTGTTGCCCTTACCACAGATTGTGGTCTGGAGATTTCTTCAGAGTTCAAAAGGTTCAGATGTAGTCACAACAAAGCAGGCCTTACTTTTCATTATTTTGCTTCAGTACATTCCACGATTTCTCCGTATGGTACCACTGACTTCTGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCTTGGGCTGGTGCTGCATATTATTTGCTATTGTTCATGCTTGCCAGCCATATAGTTGGGTCGTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGAAGAAGGCTTATAATGATAATCCCCCTTTTGACTATGGGATATTCACACAAGCCTTGAAATCTGGCATTGTTTCATCTAACAAGTTCTTGTCCAAGTACGTTTATTGTTTATGGTGGGGGCTTCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACCAGTACGTACACCGGGGAGGTTATCTTTTCAATAGCATTAGCCATAGCTGGTCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAGAGACGTGATTCAGAACAGTGGATGCATCATCGTCTGCTTCCACAAGAGCTCAGAGAGCGTGTGAGGCGATATGATCAATATAAGTGGTTGGCGACACGCGGTGTAGATGAAGAAATTTTGGTACAGAGTCTCCCAAAGGACCTTCAAAGAGACATTAAGCGTCACCTTTGTCTGGCATTAGTTAGAAGGGTTCCTTTATTTGAGATCACAGGTTTGCTGAATGAATCTATTTTCCTGGCAATTTAG 912 0.4178 MKENRVSNIYMLDELESRLASSSDAEVKTLLPLPQIVVWRFLQSSKGSDVVTTKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWKKAYNDNPPFDYGIFTQALKSGIVSSNKFLSKYVYCLWWGLQNLSTLGQGLQTSTYTGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEEILVQSLPKDLQRDIKRHLCLALVRRVPLFEITGLLNESIFLAI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03507 303 Gene3D - 29 213 - -
Trre3g03507 303 Gene3D Helix hairpin bin 216 279 - -
Trre3g03507 303 FunFam Cyclic nucleotide-gated ion channel 1 215 279 - -
Trre3g03507 303 PRINTS EAG/ELK/ERG potassium channel family signature 183 194 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03507 303 PRINTS EAG/ELK/ERG potassium channel family signature 103 113 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03507 303 PRINTS EAG/ELK/ERG potassium channel family signature 201 210 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03507 303 PRINTS EAG/ELK/ERG potassium channel family signature 251 258 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03507 303 PRINTS EAG/ELK/ERG potassium channel family signature 157 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03507 303 Pfam Ion transport protein 59 214 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre3g03507 303 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 290 - -
Trre3g03507 303 SUPERFAMILY Voltage-gated potassium channels 65 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03507 Trre-Chr3 45332784 45339460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03507 29 290 Ion Channels AT5G57940 73.597 5.28e-159 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03507 K05391 - gmx:100820202 448.743