Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03506 ATGGACTTCAAAAATGGCATAAAACTTGTCAGGTTCAACACCGATGGCAAAAACCATAAACAACAACAACAACCACCACCATCTTCATCATCTTCAATGCTTAAACCTAATAGTAGCAATGTTATACCATTAGGGAAAAACAAAATATCACGATCTAAGGTATTTTCAGAGGATCATGAACCATGGAGAAAAAGAATACTTGATCCTGGTAGTGAGATTGTGTTGAAATGGAATCGAATTTTTATAGTTTCTTGTTTGGTAGCACTTTTTGTTGATCCTTTATATTTTTATTTGCCTAGTGTGGTACAAAATACAAATTCTTCTTGTGTTAGGACTGATTTTACATTAAGGATTGTTGTTACGTTTCTTCGAACTATTGCCGATGTTTTTTATCTGTTGCATTTGATTATTAAGTTCAGAACAGCTTATGTTGCACCTAGTTCGCGTGTATTTGGAAGGGGTGAACTTGTTATGGACCCGAGTAAAATTGCAAGGCGATATATTAGATCCGATTTCTTCATTGATTTTATTGCCACACTACCATTGCCACAGATGGTTATCTGGTTTATCATACCAGCTACAAGGAGTCCTCAGACCGATCACAAGAATAATGCTCTTGCATTGATTGTCTTGCTCCAATATGTTCCAAGATTATATTTGATTTTTCCATTGAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACAAAGACTGCTTGGGCTGGAGCTGCATATAATTTGCTATTGTACATGTTGGCTAGCCATGTTTTAGGGGCATCCTGGTATCTTCTGTCTGTTGACCGATATACTACTTGTTGGAAATCCTTATGCAAAAAGGAACGTAACCCCGACAATTGCTTTCTCTACCTAGACTGCAGTTCTTTGAATAATGGTATGCGCAAGATATGGGAAAATAGTACAGATGTGTTTAGCAGCTGTGACCCCAGTAATGATGACATTCAGTTCAAGTATGGGTTATTTGAAAATGCATTAACAAAGCATGTTGTCTCTTCAAACTTCATACCAAAATACTTGTATTGTTTATGGTGGGGCTTGCAGCAACTAAGTTCTTACGGACAGAACCTAGATACGACCACATTTATTGGAGAAACGTCATTTGCTATTGTGATTGCCATCTTGGGTCTTGTATTATTTGCTCATTTGATTGGGAACATGCAGACATATTTACAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTAAAGCGAAGAGACACAGAGGAGTGGATGGGACATCGGCAACTCCCTGAAGATTTGAGATTTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCAACTCGTGGTGTTGATGAAGAAACCATTCTACGTTCATTGCCAACTGATCTTCGTCGTGATATCCAACGCCACCTATGCTTAGACCTTGTTAGACGAGTTCCCTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCAATATGCGAGCGGCTGGTATCTTCTCTAAGCACTCTAGGCACCTACATTGTTCGTGAGGGTGACCCTGTAACTGAAATGCTGTTTATCATTAGAGGCCGACTAGACAGTTCTACGACAAATGGTGGACGGACTGGTTTTTTCAACTCAATCATATTGAGACCTGGAGATTTTTGCGGTGAGGAACTACTTTCTTGGGCACTACTCCCAAAATCAACCGTGAATTTGCCATCTTCAACTAGGACAGTTAAAGCCCTAAGTGAGGTCGAAGCTTTTGCTCTTCGGGCTGAAGACCTAAAGTTCGTCGCTAATCAATTTAGGCGCCTCCACAGCAAAAAGCTGCAGCACACCTTTCGATTTTACTCTCATCATTGGAGGACTTGGGCCGCTTGTTTTATACAGGCTGCTTGGCGTCGATATAAGAAAAGGATGTCTGCCAAAGATCTTGGTTTGAGGGAATCCCTTACTTTAGATGAGACAGTGGCCAGTGAGAGATTACAAGAGGAAGAATATCCTATCGGTTCAAACTCATCACAGGCTAAAATGAACCTCGGCGTCACAATTCTTGCTTCAAGGTTTGCTGCTAACACACGAAGAGGAGCTCTAAAGATGAAAGACGACATGCCTAAGCTTCGAAAGCCAGAAGAGCCTGACTTCTCCACCGAAGCAGATGATGATTAG 2136 0.4045 MDFKNGIKLVRFNTDGKNHKQQQQPPPSSSSSMLKPNSSNVIPLGKNKISRSKVFSEDHEPWRKRILDPGSEIVLKWNRIFIVSCLVALFVDPLYFYLPSVVQNTNSSCVRTDFTLRIVVTFLRTIADVFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPSKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCWKSLCKKERNPDNCFLYLDCSSLNNGMRKIWENSTDVFSSCDPSNDDIQFKYGLFENALTKHVVSSNFIPKYLYCLWWGLQQLSSYGQNLDTTTFIGETSFAIVIAILGLVLFAHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMGHRQLPEDLRFRVRRFVQYKWLATRGVDEETILRSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTVNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSAKDLGLRESLTLDETVASERLQEEEYPIGSNSSQAKMNLGVTILASRFAANTRRGALKMKDDMPKLRKPEEPDFSTEADDD 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03506 711 MobiDBLite consensus disorder prediction 685 704 - -
Trre3g03506 711 PRINTS EAG/ELK/ERG potassium channel family signature 438 445 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03506 711 PRINTS EAG/ELK/ERG potassium channel family signature 370 381 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03506 711 PRINTS EAG/ELK/ERG potassium channel family signature 135 144 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03506 711 PRINTS EAG/ELK/ERG potassium channel family signature 252 262 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03506 711 PRINTS EAG/ELK/ERG potassium channel family signature 388 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g03506 711 ProSiteProfiles cAMP/cGMP binding motif profile. 475 605 IPR000595 -
Trre3g03506 711 MobiDBLite consensus disorder prediction 685 711 - -
Trre3g03506 711 Gene3D - 80 400 - -
Trre3g03506 711 Pfam Ion transport protein 77 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre3g03506 711 SUPERFAMILY Voltage-gated potassium channels 71 397 - -
Trre3g03506 711 CDD CAP_ED 475 606 IPR000595 -
Trre3g03506 711 SMART cnmp_10 475 606 IPR000595 -
Trre3g03506 711 FunFam Cyclic nucleotide-gated ion channel 1 473 591 - -
Trre3g03506 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 50 704 - -
Trre3g03506 711 MobiDBLite consensus disorder prediction 14 40 - -
Trre3g03506 711 Pfam Cyclic nucleotide-binding domain 499 586 IPR000595 -
Trre3g03506 711 MobiDBLite consensus disorder prediction 16 40 - -
Trre3g03506 711 SUPERFAMILY cAMP-binding domain-like 405 597 IPR018490 -
Trre3g03506 711 Gene3D Helix hairpin bin 403 466 - -
Trre3g03506 711 FunFam Cyclic nucleotide-gated ion channel 1 402 466 - -
Trre3g03506 711 Gene3D Jelly Rolls 473 593 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03506 Trre-Chr3 45315126 45327888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03506 8 710 Ion Channels AT4G30360 70.112 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03506 K05391 - gmx:100808425 1260.74