Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03501 ATGGCAAAACTATCAAAGCAACAAACTCAGAAAAACAATAATGCAAATAGCACTATCAATAATACCAAAGTGAAAAGAACAAGAAGGAGTGTCCCAAGAGATTCCCCAATTCAACGCAGCTCAATATATAGAGGAGTCACTAGGCACAGATGGACAGGTCGATATGAAGCTCATTTATGGGACAAGAATTGTTGGAATGAATCGCAAAACAAGAAAGGAAGACAAGGGGCTTATGATGATGAAGAGGCGGCAGCACATGCTTATGATCTAGCTGCATTGAAATATTGGGGTCCAGATACCATTCTTAACTTTCCGTTATGTACCTATGAGAATCAATTGAGAGAAATGGAGGATCAGTCAAGGGAGGAGTATATTGGATCGTTAAGGAGAAAAAGCAGCGGTTTTTCTCGAGGAGTTTCTAAATACCGGGGTGTAGCAAGACACCATCATAATGGGAGGTGGGAGGCTCGTATTGGCAGGGTATTTGGCAACAAATATCTTTATCTTGGAACATATGCTACACAAGAAGAAGCTGCCACTGCATACGATATGGCAGCTATTGAATATCGTGGACTCAATGCTGTTACCAATTTTGACCTCAGCCGTTATATTAAGTGGCTTAAACCTAATCATCATAACAATAACAATGAAAATAACACCAAACTTATTCATAATTCTAACCCTACAATTTGTGACACTAATGAAGAAGAACAAGGACTTAACTTGTTTCACACTCAAAATGAGTCATTTGGAAGAGAAGCAAAGGAAAAAGAAATGACAACAATAACACCGCCTCGAAAAGGTGGCGGCGCTACGTCAGCATTAGGTCTTTTGCTTCAATCATCAAAATTTAAGGAGATGATGGAAATGACAAATTGTACTGCTGCTGATGATTTGGCCACAACCCAAAAGTCATATACATTTCCTGATGACATTCAAACATATTTTGAGTGTAGTGATGATCATAATTCTTCTTCCACTAAATATGGGGAAGGAGATATTGATTTCTTCAATGGCTTCAACTTCAATGGCTTCCACTTCGCTTGA 1047 0.3887 MAKLSKQQTQKNNNANSTINNTKVKRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGPDTILNFPLCTYENQLREMEDQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHHNNNNENNTKLIHNSNPTICDTNEEEQGLNLFHTQNESFGREAKEKEMTTITPPRKGGGATSALGLLLQSSKFKEMMEMTNCTAADDLATTQKSYTFPDDIQTYFECSDDHNSSSTKYGEGDIDFFNGFNFNGFHFA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03501 348 SUPERFAMILY DNA-binding domain 41 106 IPR016177 GO:0003677
Trre3g03501 348 MobiDBLite consensus disorder prediction 1 39 - -
Trre3g03501 348 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700|GO:0006355
Trre3g03501 348 Gene3D AP2/ERF domain 42 107 IPR036955 GO:0003700|GO:0006355
Trre3g03501 348 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 253 - -
Trre3g03501 348 MobiDBLite consensus disorder prediction 251 271 - -
Trre3g03501 348 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677
Trre3g03501 348 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre3g03501 348 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Trre3g03501 348 Pfam AP2 domain 42 97 IPR001471 GO:0003700|GO:0006355
Trre3g03501 348 Pfam AP2 domain 140 191 IPR001471 GO:0003700|GO:0006355
Trre3g03501 348 FunFam AP2-like ethylene-responsive transcription factor 41 107 - -
Trre3g03501 348 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Trre3g03501 348 SMART rav1_2 42 111 IPR001471 GO:0003700|GO:0006355
Trre3g03501 348 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Trre3g03501 348 FunFam AP2-like ethylene-responsive transcription factor 140 201 - -
Trre3g03501 348 CDD AP2 140 201 IPR001471 GO:0003700|GO:0006355
Trre3g03501 348 MobiDBLite consensus disorder prediction 1 25 - -
Trre3g03501 348 ProSiteProfiles AP2/ERF domain profile. 42 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03501 Trre-Chr3 45276949 45280683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03501 135 217 AP2-EREBP Transcription Factor Family AT5G57390 37.363 9.30e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre3g03501 AP2 1.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03501 K09285 - gmx:100795869 445.662