Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03499 ATGCCTGATATGGCTAATCTTTCTGTCTCCACCGTACTCAGTTCCACCGTCAAACCCAACCCAACTGATGATGCCAATGTCCTCGATTCAGCTGCTGCTGCTGTTGAAGAACCACTACCTGATGCTGAATTTGGTTCTGATAATGGCGTCGATAATGGCTCCCATGCTCGGATTTTGAAGAGGAGTCGTAGTTCTCTTACGAAGACAGGCAATGCTAAGAGTTTTTGGGATCGACTTACAAATCCTCATTCTCTTCCATTTCTCGTTGGTGCTCCCAAGATGGTTGAATGCTTATTGTGCCACCATTCTGTGTCTCCTGAGGAGGACCTGCTATGTTCAGTTCATGGGTGTGGCTCACGCTATCATAAGGAATGTGCAAAAGAAGCCGGCGGGGTTTTACATCTGAAGAAGTTCAAGTGTCCACAACATGCGTGCTTCATCTGCAAGCAAAAGCTGCATTTGCGGTGTGTGCGTTGCCCGGCGGCTTTCCATATTAAATGTGCACCATGGCCAGAAGCAGTGGTCCTTCTGAAAGATCATCCGGGAAAAGCTATTTGTTGGAGACATCCTTCTGATTGGCGCATGGATAAAAAGGAGCAACCTGATATTCCAAAGCAACCTGATACTCCAATTACTGACATTTCGGAAATATTTTGTCGTTTGCCTCTTCCTTATATTGACGGGGAATTCAAAATCGACTTCACTTGGAAAGACATGGACAACAAGATAGAGCCACCACCATACACACACATAAGGCGCAATATATACCTAGTAAAGAAAAAGCGTAGTGATGTAGATGAAGATGCTGGGTGCACAAACTGCAGTTCTGGATGCTCTGATGATTGTGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCCTGTCGGTGCTCTGAAAATTGTAAAAATCGGCCATTTCGTAAGGAGAAAAAGATCAGGGTTGTCAAGACTGAGTTTTGTGGATGGGGAGTTGAGGCTGCTGAAACAATTGAGAAAGGAGAGTTCATAATTGAGTATGTTGGAGAAGTCATTGATGATGCTGCATGTGAACAAAGGCTTTGGGATATGAAATATAAGGGTGTACAGAATTTTTACATGTGTGAGATTCGTAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCTTCACGCTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACCCGTGTTGGTGTATTTGCTGCTCGTTCAATAGAAGTTGGAGAGCCATTAACATATGATTATAGATTTGTGCAATTCGGTCCAGAGGTGAAGTGCCGCTGCGGAGCACAGAAATGTCAAGGATTTCTAGGTTCAAAAAAGAAAATTGCCAAAATTAGAGTTGCTGGAAGACAAGCTCTCACCAACCATAGCTTCCTTCTTAGTTGCTTTTATGGCCTTGATGGGAGAACTAGCCTCCTCCTCATCACTTTCAAAAGAGCTGCCCTTGCTTGA 1488 0.4368 MPDMANLSVSTVLSSTVKPNPTDDANVLDSAAAAVEEPLPDAEFGSDNGVDNGSHARILKRSRSSLTKTGNAKSFWDRLTNPHSLPFLVGAPKMVECLLCHHSVSPEEDLLCSVHGCGSRYHKECAKEAGGVLHLKKFKCPQHACFICKQKLHLRCVRCPAAFHIKCAPWPEAVVLLKDHPGKAICWRHPSDWRMDKKEQPDIPKQPDTPITDISEIFCRLPLPYIDGEFKIDFTWKDMDNKIEPPPYTHIRRNIYLVKKKRSDVDEDAGCTNCSSGCSDDCVCRVQCISCSKACRCSENCKNRPFRKEKKIRVVKTEFCGWGVEAAETIEKGEFIIEYVGEVIDDAACEQRLWDMKYKGVQNFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCRCGAQKCQGFLGSKKKIAKIRVAGRQALTNHSFLLSCFYGLDGRTSLLLITFKRAALA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03499 495 Gene3D SET domain 230 464 IPR046341 -
Trre3g03499 495 CDD SET_ASHR3-like 311 449 - -
Trre3g03499 495 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 480 IPR025787 -
Trre3g03499 495 Pfam SET domain 321 426 IPR001214 GO:0005515
Trre3g03499 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 193 IPR013083 -
Trre3g03499 495 FunFam Histone-lysine N-methyltransferase 225 460 - -
Trre3g03499 495 ProSiteProfiles Post-SET domain profile. 433 449 IPR003616 -
Trre3g03499 495 ProSiteProfiles SET domain profile. 310 427 IPR001214 GO:0005515
Trre3g03499 495 ProSiteProfiles AWS domain profile. 267 310 IPR006560 GO:0005634|GO:0042054
Trre3g03499 495 PANTHER SET DOMAIN PROTEINS 60 456 - -
Trre3g03499 495 SMART PHD_3 145 190 IPR001965 -
Trre3g03499 495 SMART PHD_3 96 144 IPR001965 -
Trre3g03499 495 SUPERFAMILY SET domain 235 439 IPR046341 -
Trre3g03499 495 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 261 294 IPR017896 -
Trre3g03499 495 SMART set_7 310 433 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03499 Trre-Chr3 45165359 45174843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03499 291 448 C2H2 Transcription Factor Family AT2G23740 34.637 2.67e-22 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre3g03499 SET 4.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03499 - - tpra:123884811 891.723