Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03498 ATGCCTGATATGGCTAATCTTTCTGTCTCCACCGTACTCAGTTCCACCGTCAAACCCAACCCAACTGATGATGCCAATGTCCTCGATTCAGCTGCTGCTGCTGTTGAAGAACCACTACCTGATGCTGAATTTGGTTCTGATAATGGCGTCGATAATGGCTCCCATGCTCGGATTTTGAAGAGGAGTCGTAGTTCTCTTACGAAGACAGGCAATGCTAAGAGTTTTTGGGATCGACTTACAAATCCTCATTCTCTTCCATTTCTCGTTGGTGCTCCCAAGATGGTTGAATGCTTATTGTGCCACCATTCTGTGTCTCCTGAGGAGGACCTGCTATGTTCAGTTCATGGGTGTGGCTCACGCTATCATAAGGAATGTGCAAAAGAAGCCGGCGGGGTTTTACATCTGAAGAAGTTCAAGTGTCCACAACATGCGTGCTTCATCTGCAAGCAAAAGCTGCATTTGCGGTGTGTGCGTTGCCCGGCGGCTTTCCATATTAAATGTGCACCATGGCCAGAAGCAGTGGTCCTTCTGAAAGATCATCCGGGAAAAGCTATTTGTTGGAGACATCCTTCTGATTGGCGCATGGATAAAAAGCAACCTGATACTCCAATTACTGACATTTCGGAAATATTTTGTCGTTTGCCTCTTCCTTATATTGACGGGGAATTCAAAATCGACTTCACTTGGAAAGACATGGACAACAAGATAGAGCCACCACCATACACACACATAAGGCGCAATATATACCTAGTAAAGAAAAAGCGTAGTGATGTAGATGAAGATGCTGGGTGCACAAACTGCAGTTCTGGATGCTCTGATGATTGTGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCCTGTCGGTGCTCTGAAAATTGTAAAAATCGGCCATTTCGTAAGGAGAAAAAGATCAGGGTTGTCAAGACTGAGTTTTGTGGATGGGGAGTTGAGGCTGCTGAAACAATTGAGAAAGGAGAGTTCATAATTGAGTATGTTGGAGAAGTCATTGATGATGCTGCATGTGAACAAAGGCTTTGGGATATGAAATATAAGGGTGTACAGAATTTTTACATGTGTGAGATTCGTAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCTTCACGCTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACCCGTGTTGGTGTATTTGCTGCTCGTTCAATAGAAGTTGGAGAGCCATTAACATATGATTATAGATTTGTGCAATTCGGTCCAGAGGTGAAGTGCCGCTGCGGAGCACAGAAATGTCAAGGATTTCTAGGTTCAAAAAAGAAAATTGCCAAAATTAGAGTTGCTGGAAGACAAGCTCTCACCAACCATAGCTTCCTTCTTAGTTGCTTTTATGGCCTTGATGGGAGAACTAGCCTCCTCCTCATCACTTTCAAAAGAGCTGCCCTTGCTTGA 1467 0.4369 MPDMANLSVSTVLSSTVKPNPTDDANVLDSAAAAVEEPLPDAEFGSDNGVDNGSHARILKRSRSSLTKTGNAKSFWDRLTNPHSLPFLVGAPKMVECLLCHHSVSPEEDLLCSVHGCGSRYHKECAKEAGGVLHLKKFKCPQHACFICKQKLHLRCVRCPAAFHIKCAPWPEAVVLLKDHPGKAICWRHPSDWRMDKKQPDTPITDISEIFCRLPLPYIDGEFKIDFTWKDMDNKIEPPPYTHIRRNIYLVKKKRSDVDEDAGCTNCSSGCSDDCVCRVQCISCSKACRCSENCKNRPFRKEKKIRVVKTEFCGWGVEAAETIEKGEFIIEYVGEVIDDAACEQRLWDMKYKGVQNFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCRCGAQKCQGFLGSKKKIAKIRVAGRQALTNHSFLLSCFYGLDGRTSLLLITFKRAALA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03498 488 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 254 287 IPR017896 -
Trre3g03498 488 SUPERFAMILY SET domain 228 432 IPR046341 -
Trre3g03498 488 Pfam SET domain 314 419 IPR001214 GO:0005515
Trre3g03498 488 CDD SET_ASHR3-like 304 442 - -
Trre3g03498 488 Gene3D SET domain 223 457 IPR046341 -
Trre3g03498 488 ProSiteProfiles AWS domain profile. 260 303 IPR006560 GO:0005634|GO:0042054
Trre3g03498 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 193 IPR013083 -
Trre3g03498 488 SMART PHD_3 145 190 IPR001965 -
Trre3g03498 488 SMART PHD_3 96 144 IPR001965 -
Trre3g03498 488 ProSiteProfiles Post-SET domain profile. 426 442 IPR003616 -
Trre3g03498 488 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 473 IPR025787 -
Trre3g03498 488 ProSiteProfiles SET domain profile. 303 420 IPR001214 GO:0005515
Trre3g03498 488 SMART set_7 303 426 IPR001214 GO:0005515
Trre3g03498 488 FunFam Histone-lysine N-methyltransferase 218 453 - -
Trre3g03498 488 PANTHER SET DOMAIN PROTEINS 60 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03498 Trre-Chr3 45165359 45174843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03498 284 441 C2H2 Transcription Factor Family AT2G23740 34.637 3.04e-22 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre3g03498 SET 4.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03498 - - tpra:123884811 873.233