Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03476 ATGTCAACCACCGTAGTTGTTCTCGACAACGGCGGAGGTCTAATCAAAGCAGGTTTCGGCGGCGAACGCGATCCATCCGTCATTCTCCCTAACTGTCTCTACAAACCTCTCACTTCCAAAAAATGGCTCCATCCAAATCCCCTAAACACCACCACCACAACCACCACCACCACCACCGCCGCCGAACAAGACCTCACCTCCGCCTCAGTCCGCCGTCCAATCGATCGCGGCTACCTAATCAACCCCGACCTCCAACGCGACATCTGGTCTCATCTCTTCACTTCAATCCTCCACATAAACCCTTCCCAATCCTCACTCCTCCTCACTGAACCTCTCTTCACTCTTCCATCAATTCAACACTCCATTGACGAACTCGTCTTCGAAGATTTCAATTTCACTTCTCTCTACATCGCCGATTCTCCTTCCCTTGTTCATCTCTACGAAACTAGCCGTAGGCCCGATGGGCTTCTATCTAAAGCCCAATGTAGTCTCGTTGTTGATTCTGGTTTCTCTTTCACACATGCTTCACCTGTTTTTCAAAACTTTACGCTTAATTACGCTGTTAAACGAATCGATTTAGGTGGTAAAGCGTTAACTAATTACCTTAAAGAACTTATTTCTTTTCGTTCTGTTAATGTTATGGATGAAACTTTCATTATTGATGATGTTAAGGAAAATTTATGCTTCGTTTCGGTCGATGTATCTCGCCATCTTAATATTGCTAGAAAGACTGGAAATGAGAATGTTTTGAAATGTACATATGTGCTTCCTGATGGTGTTAATTATACAAAGGGTTTTGTTAAATATCCAGAACAAGCAACTAGGTATCTTGTTGATGGAAATGGTAAAGAGAATCTAGGTGGTGGTGGCGGCGGCGGTGGTGATCGTGAAATTATTATTCAACAACAACCTCAGAAATTAGTTGATTTGACGAAAAATGAATTTGACTTGACGAATGAACGGTTTCTTGTACCCGAGATGATCTTCCGTCCAGCTGATTTGGGAATGAACCAGGCTGGGTTACCAGAATGTATAATACGAGCTGTTAATGCCTGCCATCCACATCTTCACCCCGTACTCTATGAAAGCATCATTTTGACTGGTGGAAGCACCTTATTTCCTCACTTTGCTGAACGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGACTATCGTGTGAAGATAACTACACAAGAAGATCCCCTACTAGGTGTTTGGCGTGGAGGTTCACTTCTAGCATCGAGTCCAGATTTTGATGCAATGTGTGTAACCAAAGCTGAGTATGAGGAGCTGGGTTCTGCTAGATGTCGCAAGAGATTTTTTCATTAA 1332 0.4377 MSTTVVVLDNGGGLIKAGFGGERDPSVILPNCLYKPLTSKKWLHPNPLNTTTTTTTTTTAAEQDLTSASVRRPIDRGYLINPDLQRDIWSHLFTSILHINPSQSSLLLTEPLFTLPSIQHSIDELVFEDFNFTSLYIADSPSLVHLYETSRRPDGLLSKAQCSLVVDSGFSFTHASPVFQNFTLNYAVKRIDLGGKALTNYLKELISFRSVNVMDETFIIDDVKENLCFVSVDVSRHLNIARKTGNENVLKCTYVLPDGVNYTKGFVKYPEQATRYLVDGNGKENLGGGGGGGGDREIIIQQQPQKLVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLPECIIRAVNACHPHLHPVLYESIILTGGSTLFPHFAERLEKELRPLVPDDYRVKITTQEDPLLGVWRGGSLLASSPDFDAMCVTKAEYEELGSARCRKRFFH 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03476 443 PANTHER ACTIN 6 434 IPR004000 -
Trre3g03476 443 FunFam Actin-related protein 6 138 198 - -
Trre3g03476 443 SUPERFAMILY Actin-like ATPase domain 2 144 IPR043129 -
Trre3g03476 443 CDD NBD_sugar-kinase_HSP70_actin 87 205 - -
Trre3g03476 443 FunFam Putative actin-related protein 5 406 434 - -
Trre3g03476 443 Pfam Actin 3 442 IPR004000 -
Trre3g03476 443 SUPERFAMILY Actin-like ATPase domain 161 442 IPR043129 -
Trre3g03476 443 SMART actin_3 3 442 IPR004000 -
Trre3g03476 443 Gene3D Actin; Chain A, domain 4 199 271 - -
Trre3g03476 443 Gene3D - 2 173 - -
Trre3g03476 443 Gene3D - 308 413 - -
Trre3g03476 443 FunFam Putative actin-related protein 6 199 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03476 Trre-Chr3 44964117 44967197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03476 6 442 Cytoskeleton Gene Families AT3G12110 26.879 3.34e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03476 K11662 - gmx:100819827 691.804