Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03454 ATGGCACCAAAAAACATCAAAGAAGAGAATCAAAGAATAGTCTTCACCGAAGAAGACGATCTTATAATTTTAAAAGCTATTCCGAAGTTTATGTCCGAAACCGGAGAGACTGCCTATTCTCATGATTTTCACACTTTTGTGAAAAATAAGGTTCGTGGTAAAATAAGCTTCAAACAATTGAATCGAAAGATTCGCGGTTTCAAGACAAAGTATGGAAAAGAAGGTAAAACCTTCACTAAAACTCATGAAAAGAAAGCTTTGAAGCTTTTCATGAAGATTGATTGGGGAACAAAGGGTGGAAGTAAATCTGGAAGTAAATCTACGGAAAAGGAAAATCAAGTTGCTCAACTGAAGATGTGCATTGATCGGGCAAAGTTCATCAAGGATCAGGCCATCTTGATGATACAAGAACTCGAGAATTCGGATGATTAA 432 0.3634 MAPKNIKEENQRIVFTEEDDLIILKAIPKFMSETGETAYSHDFHTFVKNKVRGKISFKQLNRKIRGFKTKYGKEGKTFTKTHEKKALKLFMKIDWGTKGGSKSGSKSTEKENQVAQLKMCIDRAKFIKDQAILMIQELENSDD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03454 143 Pfam Protein of unknown function, DUF573 14 93 IPR007592 GO:0006355
Trre3g03454 143 PANTHER BNAANNG10740D PROTEIN-RELATED 9 116 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03454 Trre-Chr3 44687024 44687455 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03454 11 99 GeBP Transcription Factor Family AT1G61730 37.895 3.41e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre3g03454 DUF573 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03454 - K03797 cam:101512869 64.3142