Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03453 ATGGTTATGATTGAATGTGTTCATATATGTAGTGGAACATGTGGAGTGTCTGTTGCTATTTCTTTGGCTGATATGCACTATTGTGAATCCAACAAGATGGAATTCAAAAGATTCTTCGGAATTGTTGTCAAGCGAACTTTCCCCAAAAACAATCAACAGCTCATCAACAATCAACCCATTTCGCCTTACCCTTTCAATATCAAGGAAAGCTTCATGAAGGGTCAAGACATGGAAAATTATAATATTGAAATTGATATGATAGGGTTTGAAAAGTGGAAAAATATGTCAGAGGAGGAGAAGCAACCATTTGTTTCTCGTGCTAGAGAATTGGACAATAAACACCAAGAAGCTTTGAAACAGGAGGCTGATGAGATCATAAAGGTTAGGTATGGAGCTGATTCACCAATGATTGATGAGATGCAATCGATCTTTGGAGAATCTGTAGAGTTTTCAAAATAA 459 0.366 MVMIECVHICSGTCGVSVAISLADMHYCESNKMEFKRFFGIVVKRTFPKNNQQLINNQPISPYPFNIKESFMKGQDMENYNIEIDMIGFEKWKNMSEEEKQPFVSRARELDNKHQEALKQEADEIIKVRYGADSPMIDEMQSIFGESVEFSK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03453 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 56 122 IPR009071 -
Trre3g03453 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 69 125 - -
Trre3g03453 152 CDD HMG-box_CMB1-like 58 118 - -
Trre3g03453 152 SUPERFAMILY HMG-box 57 120 IPR036910 -
Trre3g03453 152 Gene3D High mobility group box domain 57 120 IPR036910 -
Trre3g03453 152 Pfam HMG (high mobility group) box 81 119 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03453 Trre-Chr3 44676003 44680156 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre3g03453 HMG_box 7.6e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03453 - - psat:127115600 128.642