Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03447 ATGGCACGAAGAAGAAAAGTTAAGAAAAGGGTTTGCGCCATTCCTCGTGCTCCTGATGGAAGTGCCTTTTTTAACTGTGGAACATGTGGGGTGTCTGTTGCTATTTCTTTGGCTGATATGCACTATTGTGAATCCAACAAGATGGAATTCAAAAGATTCTTCGGAATTGTTGTCAAGCGAACTTTCCCCAAAAACAATCAACAGCTCATCAACAATCAACCCATTTCGCCTTACCGTCTTTTTATGGAAAGCTTCATGAAGGGTCAAGACATGGAAAATTATAATATTGAAATTGATAGGATAGGGTTTGAAAAGTGGAAAAATATGTCAGAGGAGGAGAAGCAACCATTTGTTTCTCGTGCTAGAGAATTGGACAATAAACACCAAGAAGCTTTGAAACAGGAGGCTGATGAGATCATAAAGGTAAGGTATGGAGCTGAGTCACCAATGATTGATGAGATGCAATGGATCTTTGGAGAATCTGTGGAGTTTTCAAAATAA 501 0.3912 MARRRKVKKRVCAIPRAPDGSAFFNCGTCGVSVAISLADMHYCESNKMEFKRFFGIVVKRTFPKNNQQLINNQPISPYRLFMESFMKGQDMENYNIEIDRIGFEKWKNMSEEEKQPFVSRARELDNKHQEALKQEADEIIKVRYGAESPMIDEMQWIFGESVEFSK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03447 166 SUPERFAMILY HMG-box 65 134 IPR036910 -
Trre3g03447 166 Gene3D High mobility group box domain 72 141 IPR036910 -
Trre3g03447 166 Pfam HMG (high mobility group) box 78 133 IPR009071 -
Trre3g03447 166 CDD HMG-box_CMB1-like 73 132 - -
Trre3g03447 166 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 7 138 - -
Trre3g03447 166 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 71 136 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03447 Trre-Chr3 44614774 44617307 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre3g03447 HMG_box 1.4e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03447 - - psat:127115600 182.185