Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03442 ATGGTTTTGCCCTCACGCTTCTCCTACAAGTGGGAGATAGTTGTTAATACCTCGATTGCTAGGGGTAGAAATGTTTTGACTTTCCCAAGGGAATTCTCAAGAAATTGTTTGTTAAACTCGGAGGATAACATATATCTGATTGATACTGCTACTGGGAGAATCTTTAAATCCCCAATTTTTACTTCCTCCAAAAATAAAGAAGATAGATTTGTGTATGCAGCATGGAAGGCTTTCGTGAAGGAGAAAAGGCTGAAGTTCAGGGATAAAATTATTTTTGATTCTAGGAATGGGAATCACGTCGTCGAGGTGCAGGTTGTTCGTCGAAGCAAGTGA 333 0.3964 MVLPSRFSYKWEIVVNTSIARGRNVLTFPREFSRNCLLNSEDNIYLIDTATGRIFKSPIFTSSKNKEDRFVYAAWKAFVKEKRLKFRDKIIFDSRNGNHVVEVQVVRRSK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03442 110 SUPERFAMILY DNA-binding pseudobarrel domain 14 108 IPR015300 -
Trre3g03442 110 ProSiteProfiles B3 DNA-binding domain profile. 11 109 IPR003340 GO:0003677
Trre3g03442 110 Gene3D - 5 110 IPR015300 -
Trre3g03442 110 Pfam B3 DNA binding domain 21 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03442 Trre-Chr3 44512792 44513227 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre3g03442 B3 2.3e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03442 - K09287 tpra:123885964 149.058