Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03419 ATGGCAAAGAAACGTCAAACAAACACCACCGCCGCCTCCAACCAACCACTCACCCCCGCCTCAAAGAGCAACAAACCGCCACCACCGTCCAAAAAGCCAGAAGAAGACAAAGTCGAAGAGATAGACGACGATGAAGAGGTAATATCGGTAAATACTTCTTCATCTGAAGGTGAAGAAGATGACGATGATGATGCAGAAGACGATGCAAAATCGAAAAAAGATGAAGACAACGACGAAGAAGAAACCGATAGTAGTGATTCTGATGATGAAACGGTTCCACCTCCTAAAATCAAATCCATCAACTCAAAATCCTCTGCTTCAACGGCTAGATCTGGAACCAAACGTTCCGCTGATGACGACACGAAACATTCCGCTGATGACAACACCAAACAATCAAAGAAGAAGAAAACAATCTCCGCTGCTGATGATGAGAAAAAGAAGGAGAAGGAGGTTGATAACAAGAAGTCCGGTGATGATTCGAAAAAATTGTTCCAGAGAGTTTTCACCGAGGATGATGAACTCACAATTCTCAAAGGTCTGGTCGATTTTAAAGAAGAAAAAGGGACTGATCCGCTCAAATATCCCACAGATTTTTATGAGGAAGTGAAAAAGTCGATTTCATTTGCAGTTACACTCGATCAACTGAAAGATAAGATGCGGAGGCTGAAAACTAAATTTGAGAATAAAATGAAAATTTGTAAAAATGGAAAGATTCCTACTTTTTCCAAACCTGTTGAAGAGGAAATGTTTGAATATAGCAAAAAGATCTGGGGTGATACTGATGAAAATGGAAAGGCTGCTGAGAAACAAGTTGCTGCCAAGAAACCACCAACAATGAAGAAATTGGTGATGGAAACTGATTTTCAGGTTGGAAGTAGTAGTGATGGAAAGGAGAATCCTGGGTCGAGTTACATTATGACTGAAATGCATCGATTAGGTGTTTTTGGGGTGAGTATAGGTTTGCTTAAGAGTGAATTGGAGTTGATTGAGGAATCAAAGAGGGTAGAGATTGAGAAAAAGTGGAAGGAGTTGCGAGTTGCTGAACTGAATCATCATCAAGCGACGATTAGTCTCATAACTTCAACTTGGGCTATTTGGCTACGTAATGTTCAAACCTTCAAAAACAAAGAAAAGAATGTTAGATAA 1146 0.4014 MAKKRQTNTTAASNQPLTPASKSNKPPPPSKKPEEDKVEEIDDDEEVISVNTSSSEGEEDDDDDAEDDAKSKKDEDNDEEETDSSDSDDETVPPPKIKSINSKSSASTARSGTKRSADDDTKHSADDNTKQSKKKKTISAADDEKKKEKEVDNKKSGDDSKKLFQRVFTEDDELTILKGLVDFKEEKGTDPLKYPTDFYEEVKKSISFAVTLDQLKDKMRRLKTKFENKMKICKNGKIPTFSKPVEEEMFEYSKKIWGDTDENGKAAEKQVAAKKPPTMKKLVMETDFQVGSSSDGKENPGSSYIMTEMHRLGVFGVSIGLLKSELELIEESKRVEIEKKWKELRVAELNHHQATISLITSTWAIWLRNVQTFKNKEKNVR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03419 381 MobiDBLite consensus disorder prediction 97 112 - -
Trre3g03419 381 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g03419 381 MobiDBLite consensus disorder prediction 1 161 - -
Trre3g03419 381 Coils Coil 212 232 - -
Trre3g03419 381 MobiDBLite consensus disorder prediction 38 69 - -
Trre3g03419 381 PANTHER BNAANNG10740D PROTEIN-RELATED 53 350 IPR007592 GO:0006355
Trre3g03419 381 Pfam Protein of unknown function, DUF573 164 258 IPR007592 GO:0006355
Trre3g03419 381 MobiDBLite consensus disorder prediction 113 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03419 Trre-Chr3 44277967 44279732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03419 76 349 GeBP Transcription Factor Family AT1G61730 30.945 7.45e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre3g03419 DUF573 5.9e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03419 - - tpra:123884521 293.893