Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03378 ATGATTCCACACAAGACAAAGCGTGGAGAAGCCGCACTTGCTCGATTGAAGGTTTATGAGGGTATTCCTCCTCCATATGACAAGATCAAGAGGATGGTTGTTCCGTATGCACTTAAGGTGTTGAGACTTCAAAAGAGTCACAAATACTGCTTGCTTGGACAATTGTCATCAGAGGTTGGATGGAATTACTATGACACTATGAAGGAGCTGGAGAAGAAGAGGAAGGAACGTGCACATTTGGCTTATGAGAAGAAGAAGCTGCTTACTAAATTGAGGGCTAAAGCCGAGAAGAATGTAGACGAGAGACTTGCTCCACAACTTGAAATCCTTGCACCCGTTAAATACTAA 348 0.431 MIPHKTKRGEAALARLKVYEGIPPPYDKIKRMVVPYALKVLRLQKSHKYCLLGQLSSEVGWNYYDTMKELEKKRKERAHLAYEKKKLLTKLRAKAEKNVDERLAPQLEILAPVKY 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03378 115 Gene3D - 65 115 - -
Trre3g03378 115 FunFam 60S ribosomal protein L13a 64 115 - -
Trre3g03378 115 Gene3D Ribosomal protein L13 1 63 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trre3g03378 115 SUPERFAMILY Ribosomal protein L13 1 63 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trre3g03378 115 PANTHER RIBOSOMAL PROTEIN L13 1 97 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03378 Trre-Chr3 42901682 42902204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03378 1 115 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 78.261 1.07e-62 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03378 K02872 - csav:115722456 190.274