Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03363 ATGGCTGTGGAGAATCAAAAGGTTCATTTAAGAGATGATGAAGAAGAAGATGGTGTCATTAACCGTTTTCGTATTGTGGGTATGCGTGTTCTTGCTGTTGATGACAACCCAACTTGTCTCAAAATTTTGGACCAATTGCTTCGTCAATGCAAATATCATGTTACTACTGCTACAAATGCAATTGAAGCACTGACAAAGTTGAGGGAAAACAGAAATAACTTTGACTTGGTTATTAGTGATGTTGATATGCCTGATATGGATGGATTTAAGCTTCTTGAGATGGTGGGACTTGAAATGGACTTACCTGTCATCATGTTGTCGGGACATGGTGATAAAAACATGGTGTACAAGGGTATTTCACACGGTGCATGTGACTATTTGGTGAAACCTGTTCGACTTTCAGAGCTCCAGAACATATGGCAACACGTAGTCCGAAAACAAAAAACTACTTCCAAGGATCAGAATAGGAACCCTAATATTTCCGGGGGAAATATTAAAAAGATATTGGAGAATAGTGCTGAACAGAATAAAAACTTAGGTAAAAGAAGGAAGGACCAAACTGAGGAGGAAGAAAATGAAGAAGGTGAAGGGACTGGAGATGAGGATGACCCCTCATCGCAGAAGAAACCTCGTATGGTTTGGTCTGTCGATCTGCATAGGAAATTTGTTAGTGCGGTTAATCAACTCGGCTTAGAAAAGGCTGTTCCGAAGAAAATACTTGACCTGATGAATGATGAAACGCTTACTGTTAAGATAGTTAAAGGAAAATGTCGCAAGCCATCTGCAGAAATTTAG 795 0.3962 MAVENQKVHLRDDEEEDGVINRFRIVGMRVLAVDDNPTCLKILDQLLRQCKYHVTTATNAIEALTKLRENRNNFDLVISDVDMPDMDGFKLLEMVGLEMDLPVIMLSGHGDKNMVYKGISHGACDYLVKPVRLSELQNIWQHVVRKQKTTSKDQNRNPNISGGNIKKILENSAEQNKNLGKRRKDQTEEEENEEGEGTGDEDDPSSQKKPRMVWSVDLHRKFVSAVNQLGLEKAVPKKILDLMNDETLTVKIVKGKCRKPSAEI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03363 264 Coils Coil 169 196 - -
Trre3g03363 264 Gene3D - 27 161 - -
Trre3g03363 264 SUPERFAMILY CheY-like 27 156 IPR011006 -
Trre3g03363 264 MobiDBLite consensus disorder prediction 145 210 - -
Trre3g03363 264 Gene3D - 205 260 - -
Trre3g03363 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 254 IPR006447 GO:0003677
Trre3g03363 264 FunFam Two-component response regulator 205 258 - -
Trre3g03363 264 SMART REC_2 28 140 IPR001789 GO:0000160
Trre3g03363 264 PIRSF RR_ARR_type-B 9 251 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre3g03363 264 MobiDBLite consensus disorder prediction 153 175 - -
Trre3g03363 264 CDD REC_typeB_ARR-like 30 144 - -
Trre3g03363 264 Pfam Response regulator receiver domain 30 138 IPR001789 GO:0000160
Trre3g03363 264 SUPERFAMILY Homeodomain-like 207 254 IPR009057 -
Trre3g03363 264 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
Trre3g03363 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 253 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03363 Trre-Chr3 42459297 42463792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03363 26 259 Response Regulator Gene Family AT2G25180 60.256 1.87e-86 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre3g03363 Response_reg 6.5e-26 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03363 K14491 - psat:127085782 375.941