Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03345 ATGGATCCAAAATCTAACACTCTGCTTCGATTGGTCTTCCAAAAACCTACCTCCTTCCGAATTCCCTTCCGTTCTTCCTATGCCGGTTATCCTTCAAAAGATCGAATCTTTGTTTTCAATGGTGATTATGTTGATCGTGGAGCTTGGGGACTCGAAACTTTCTTGCTCTTGTTGGCTTGGAAGGTATTCATGCCAGAAAACATATATTTATTAAGAGGGAATCATGAATCGAAATATTGCACTTCTGTTTATCGTTTTGAAAAGGAAGTTATGGTAAAGTATAGTGACAAAGGCAAACACGTATACCGGAAATGTTTAGGATGCTTTGAAGGTCTACCTTTGGCTTCTATTATAGCAGGGTGTGTATACACAGCCCACGGAGGACTTTTCCGTAGTGTAACTGTGACACCTTCAAAGAGATTAAAAGGAAAGAAGAATCGTAAGATTAATGTTACTACCGATAGCAAAAATCTATCGCTTGGTTCCTTGGAAGAGTTGTCCAAGGCTCGACGTTCAGTGCTTGATCCTCCTTGGGAAGGACAAAACTTGATTCCTGGTGTTGTTTTGTGGTCTGATCCTTCAAAAATGCCTGGTCTTTCTCCAAACAAAGAGAGAGGCATTGGCTTGATTTGGGGTCCTGATGTTACTGAAGCATTTTTGAAGAAGTACCAATTTAAGTTGATCATCAGGTCACATGAAGGTCCTGATGCTAGGGAGAAAAGGGATGGTTTTGAGGGAATGGATGAAGGTTACACTATTGATCATATTGTGGAATCTGGAAAGCTGATCACCGTGTTTAGTGCTCCAGATTACCCACAATTTCAGGCAACGGAGGAGAGGTATAACAACAAAGGTGCATATGTTGTCCTTGAGCCCCCAAATTTCGACAATCCTATATTTCATGGATTTTCGGCTGTTACTCCAAGGCCAAAGGTAAAGAAATATTTCACTAACCTTCGTGTTAAGGAAATTTCTAACATTAAATGTAGTAGGGAAACTTTTATTAGTACACAAGACATCTTCAACAATTTTGTAATAATAGAATTATTTGTGTAA 1056 0.3939 MDPKSNTLLRLVFQKPTSFRIPFRSSYAGYPSKDRIFVFNGDYVDRGAWGLETFLLLLAWKVFMPENIYLLRGNHESKYCTSVYRFEKEVMVKYSDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSVTVTPSKRLKGKKNRKINVTTDSKNLSLGSLEELSKARRSVLDPPWEGQNLIPGVVLWSDPSKMPGLSPNKERGIGLIWGPDVTEAFLKKYQFKLIIRSHEGPDAREKRDGFEGMDEGYTIDHIVESGKLITVFSAPDYPQFQATEERYNNKGAYVVLEPPNFDNPIFHGFSAVTPRPKVKKYFTNLRVKEISNIKCSRETFISTQDIFNNFVIIELFV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03345 351 ProSitePatterns Serine/threonine specific protein phosphatases signature. 71 76 IPR006186 GO:0016787
Trre3g03345 351 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 28 315 - -
Trre3g03345 351 SMART pp2a_7 1 310 IPR006186 GO:0016787
Trre3g03345 351 Pfam Calcineurin-like phosphoesterase 35 235 IPR004843 GO:0016787
Trre3g03345 351 SUPERFAMILY Metallo-dependent phosphatases 28 308 IPR029052 -
Trre3g03345 351 Gene3D - 8 345 IPR029052 -
Trre3g03345 351 PRINTS Serine/threonine phosphatase family signature 261 277 IPR006186 GO:0016787
Trre3g03345 351 PRINTS Serine/threonine phosphatase family signature 70 94 IPR006186 GO:0016787
Trre3g03345 351 PRINTS Serine/threonine phosphatase family signature 37 64 IPR006186 GO:0016787
Trre3g03345 351 PRINTS Serine/threonine phosphatase family signature 107 133 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03345 Trre-Chr3 41976920 41982880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03345 28 227 Calmodulin-binding Proteins AT5G63870 71.642 4.48e-105 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03345 K04460 - gmx:100810695 552.362