Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03313 ATGATGTATCATCTCAATAGCTTACAATTATTCGAGCTTACAAATAAACCAGCTTTGGAAAAAGACCGATACAAAATCCGTGAAGCACTCATAGCTGCTCCTGGGAATTCTCTTATAGTTGCTGATTATGGACAGTTGGAACTTAGAATACTTGCACATCTTACTAATTATAAGAACATGTTAGAAGCCTTTGAAGCTGGTGGAGATTTCCATTCCAGAACTGCAATGAATATGTACCCGTATATTCTTCAAGCGGTACCAAGAAAGGAACTTCAGCTTGTTGGCTTAAGCTCCATGCTTATAACATCCAGATATGAGGAGTTATTGGCACCAGAGAAATTACTAGACCAAGGAGTGATTTGA 363 0.3829 MMYHLNSLQLFELTNKPALEKDRYKIREALIAAPGNSLIVADYGQLELRILAHLTNYKNMLEAFEAGGDFHSRTAMNMYPYILQAVPRKELQLVGLSSMLITSRYEELLAPEKLLDQGVI 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03313 120 Pfam DNA polymerase family A 13 81 IPR001098 GO:0003677|GO:0003887|GO:0006260
Trre3g03313 120 PRINTS DNA-polymerase family A (pol I) signature 67 80 IPR002298 GO:0003887|GO:0006261
Trre3g03313 120 PRINTS DNA-polymerase family A (pol I) signature 15 30 IPR002298 GO:0003887|GO:0006261
Trre3g03313 120 PRINTS DNA-polymerase family A (pol I) signature 37 60 IPR002298 GO:0003887|GO:0006261
Trre3g03313 120 SUPERFAMILY DNA/RNA polymerases 10 83 IPR043502 -
Trre3g03313 120 PANTHER DNA POLYMERASE I 15 80 IPR002298 GO:0003887|GO:0006261
Trre3g03313 120 Gene3D - 6 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03313 Trre-Chr3 41389479 41390332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03313 83 112 Core Cell Cycle Gene Families AT3G11520 60.000 6.29e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03313 K02335 - gmx:100790704 139.043