Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03305 ATGGCTTTTCATCACGACCATCTATCAAACGAAATCAATTTTCAACCATTCAATGAAGAGCAACAGTTAAGTCAAAGCAGAGACATGCAAAGACTACTACCATTCAACGGCGGCGGTGGAGCTGGATCAGCACCGACGTGGCTGAACAACGCCGTAACCTTACGGCAGCAGAATTTCCTCCACTTACAACCAGACACATCACAAAACGACGACGTGAGAGGTATGAATAGGGATCGGAGCCGAACCGAGAGCACTCACAACGAATCAGAGGAATTATCTTTATCACAGTACAAAGCAGAGATTCTAGGACATCCCCTCTATGATCAGCTTTTATCCGCTCATGTTTCGTGTCTGCGAATTGCGACGCCTGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAATCGCAGCGTGTGGTGGATAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAGAAAGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTTTGTGCTTTTAAAGAACAATTGCAACAACATGTTCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAACAGTCTCTACAAAGCTTGACCGGTGTATCTCCCGGTGAAGGGAGCGGTGCAACAATGTCGGACGACGAAGACGACCAAGCAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCTCCTTTGGCCCTCTTGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGAGTAAGATAGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTACCAGGTGATACAACTTCCCTTTTGAAAGCTTGGTGGCAGTCACACTCTAAATGGCCTTATCCCACAGAAGAAGACAAGGCGAGGTTGGTTCAAGAAACAGGACTTCAACTAAAGCAAATAAATAATTGGTTTATAAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCCTCTTCCACCGGTTCCAAAACCAAGCGCAAGAGTAGTGGTGCAGGTGAAACAAGTAATCAGAGCTTCATGTGA 1110 0.4541 MAFHHDHLSNEINFQPFNEEQQLSQSRDMQRLLPFNGGGGAGSAPTWLNNAVTLRQQNFLHLQPDTSQNDDVRGMNRDRSRTESTHNESEELSLSQYKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAAESNANLYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGAGETSNQSFM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03305 369 MobiDBLite consensus disorder prediction 61 92 - -
Trre3g03305 369 MobiDBLite consensus disorder prediction 202 221 - -
Trre3g03305 369 Pfam KNOX2 domain 152 201 IPR005541 GO:0003677|GO:0005634
Trre3g03305 369 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Trre3g03305 369 MobiDBLite consensus disorder prediction 337 369 - -
Trre3g03305 369 SMART ELK_2 260 281 IPR005539 GO:0003677
Trre3g03305 369 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
Trre3g03305 369 CDD homeodomain 283 344 IPR001356 GO:0003677
Trre3g03305 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 351 - -
Trre3g03305 369 MobiDBLite consensus disorder prediction 71 88 - -
Trre3g03305 369 Gene3D - 286 362 - -
Trre3g03305 369 SMART HOX_1 282 347 IPR001356 GO:0003677
Trre3g03305 369 SUPERFAMILY Homeodomain-like 282 346 IPR009057 -
Trre3g03305 369 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Trre3g03305 369 FunFam homeobox protein knotted-1-like 3 isoform X1 281 342 - -
Trre3g03305 369 SMART KNOX1_2 95 139 IPR005540 GO:0003677|GO:0005634
Trre3g03305 369 Pfam KNOX1 domain 97 138 IPR005540 GO:0003677|GO:0005634
Trre3g03305 369 SMART KNOX2_2 147 202 IPR005541 GO:0003677|GO:0005634
Trre3g03305 369 Pfam ELK domain 260 281 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03305 Trre-Chr3 41335916 41344704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03305 88 364 Homeobox Transcription Factor Family AT5G11060 82.206 3.98e-165 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre3g03305 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03305 - - gmx:100816347 609.372