Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03300 ATGCGACCACCACCGCTGAATGTAGTTCGATCGGAGGAGCCACTTGTTTCGGGGGCGGTTAGGGACAATGGAGCCTCTGGTGCGGTTCCTATTTTTTACCCTGATGGTGGTTTGGCTGGAGTGCGATATGGAAATGTGGCTTCTGGTGCTGCTTCAACTACATGGTGTATTCGTCCCGGTGTTCCCCATCCCACTTTGAGCCCTACTGTTGGGTTTAATTTTCCCAATCGTGTTGTTGGTGGCAATGCTGTTGATCTTTCAGGTAGTTTTGTTGCAACTGCTGCTAATGGATATCCTTTGAATTTGGGTAATTGGGTTGCCGGTAATGCTTTGGATAACAATAATCTTCAGTACACTAGTGGCAGAGTAATTAGCAATGGTAGTGATCGTGCTGGTGGTGTTGGGTTTGTTGGGATTGGTTCCAGTCCCCCTGCTAACCAGCAGGTTGATCAGGCGAGTGAAAAAGGTGGGGATGATTCGGTTTCTTCGCGGAAATTGAAGTTCATGTGCAGTTATGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGGTATGTTGGTGGGCAGACTAGGATAATAAGTGTTAAGAGAGATGTTAGTTTTAATGATTTAGTGCAAAAGATGGTCAATACTTTTGGGCAACCTGTGGTTATCAAATATCAGCTTCCCGGTGAGGATCTTGATGCGTTGGTATCGGTTTCCTGTGCCGATGATCTGGATAATATGATGGAGGAGTATGAAAGGTTGATTGAGAGGTCTTCAGATTGTTCCCCGAAATTAAGGGTCTTTCTGTTTTCTGCTTCGGAACTTGATCCTTCTGGTCTGATACAGTTTGTAAATTTACATGATGGTGGACAGAAATATGTTGAAGCTGTGAATGGAATTGCTGAGAGGGTTATTGGCAAGCTTACAAGGAAAGGGAGTCTTACAAGTGCAGCTTCTACTCAAAATTCTGATTTGAGTGGGTTAGAGGCTCATGATAGCACAAATGCTGCTCATGCAGATTTTAGTGGCCCATCTATATCCAGCACTTTATCACCTGATACGAATATTGCTGCATCTAATGATTCTGCTACTACAAATGTTATGGTTTCTGAGCCTATTGAATCAGTATGCTCAGATGTTTCTGCAGTTTCATTGGGTATACCTGTGGCTGATTCAGGTCCAACTCATACTCCACCTTTCCAGAAAGAGGATGAGATAGAGAAGTCTGTGCCCGCTACTTTATCCCAGAAGCAGTTTGTGTTGCAGCAGCCTGGAATGCAAATTCCACCCTGTGCACCTTTGCAGGCATTTGTTGATCCTCAACAGGAAGTTCTGAACCATGCAGAATATGTCCAGATGCCTGCCCATATGGGATTCCCAAATCATCAGTTTATAGGTAGGCCTGAGACTATCTACTCTCAGCATCACTTTCATGATAACAATGCTCGTTATGCATCCCAACAGGCAATCCCTGCAGTGCAGATTACAATGACTCAACCATCTTCCCATGCCGGTATAAGACCAAGTATTATACATCCACGAACAGTCATGCAAGGGCAACAAAACGGTTTTGAGCAATATTATGATGAAAATACTTTAGGGTTAAGGATGCACCACCAAGTTATTTCTGAGCAAAGTTACAAAGCATATCCAATTCAAGTCCCTTTCGGAAGTAATTATGGCTGGGTTCAGGTTTCTCCTTCAGAGCATGCTATTTTTCATGACGAATTGTTACCTCAGCAACCAGTAATGGTCCCTCAAAGAGTGGAGGATTGTTATATGTGTGAGAAAAAGCTGCCTCATGCACATTCAGATCCAGTGGTCCAGGATCAGCATAATAGCTGTGCAGCTTTAATTCCTGATTCAATGGCAAGTTATAATAGTCTCCCGGTAGAGGACAGTTTAAGAGCTCAACCAACAAATACTCAACCAACAAATAGGGTTTTGGTGACTACACCAGTGAAGGAAGGCAATGTTAATTTTGAACAAGAAGTTGGGACTAGACTCAGGGTCATGATACCATGTAGTGACACAAGTGGTCTTCCTCTGGAGGCTGAAAGTGAGAGAAATAGGTCTGATCATCCCAGAAATGCAGTGGTTATCCCGGATATAGTTGGAAGAACAGGTGACAAACAGTCGCCAAGTGATGGGCTGACTGAAACAGCACCATTGTCTTATCTAGATGATTTCGCTCACCAGAACATGGTGCCAGATGAAAACTGGGCCGAAGAAGATGTAGTTGTGAATAAGCCTGTTAATGAAATACCTTTAGTCTGTGGCAAATCTATTGAAACTTCTGAATGTGTGGTTCAAGTATCATCAACGGAATCTACAAATGAGCTTGCTAGTACAATTTCAAGAGCAGATGCTGTGGAGAATTGGATTGCACATGACCTGCTCAAACCTATTGATGGAAGAACTGACAACATCAAGATAAGCAATCCTGAAATTTTTGTGAATAATGAAAATATTGATTACAATACTCAGCTTGCTATTGAGAAGAAATGGGTGGTTTCAGATAACAACCTTTGCAGGTCAAAATTGAGTGCTGATGCCAATCAAATTAAGACGGTGGATGCTCTTCCCAATTCCACTGTAGAAATTTCATATAGTAATAATTCTAGGCCAGTGAAGTACAATGAGGTTGAACACCCGCCTATTTGGGGCATTCCTGGAGCAAATCATCAATCAAAGAATGGAATCCATCAGAAGGATGATGCATTTTTATCTTCAGTTTCGCAACCTGCTGGGTTTGAACATATGCATGATTCTTCAAACTCACTTTTTAGCAATCAGGATCCTTGGAATTTACGTGGTACTTACTTTCCACCCCCTAGACCTGACAAAGTCACATCAAAGAAAGAAACCTATTCTTATATGCATCAGTCTGGTGAGAATTCAGGCAACATCAGGGAACAAACTCTTGATGTTCAATTGGATGATGGCCTCTATCAGACATTTAAACAGAATTTAACATCAGAAGAAGCTCAATATGCCAAGGGATCACCAGAAGACCAACAACTTCAAGCTGTTGCTGAAAGTTCAGCCGCATCTGTTCTGCACTCAAGCACTTCAAATCCTGACTTACAAGCCCGAGATGTGTCCCATCATGAAGACATTGAAGATGGAGATGTTAAAAATAATCAACTAGATATACAGTGTAAAGAAAAAACTCAGGATGACAAAAGCAAGCTTTCGGAGAAGGCAAATTTTGGCTTTCCAGCATCAGATGTTGGAGCGTTACAGATTATAAGGAATAGTGACCTTGAAGAGCTTGTAGAATTGGGCTCTGGGACCTTCGGGACTGTGTATCATGGAAAATGGAGAGGTACTGATGTTGCAATAAAGCGGATTAATGATAGGTGTTTTGCTGGAAAGCCTTCAGAGCAAGAGCGCTTGAGAGCTGATTTTTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCACCCAAATGTGGTAGCTTTCTATGGTGTTGTTCTTGATGGCCCAGGAGGTTCCGTGGCAACGGTAACAGAGTATATGGCTAATGGTTCTCTAAGAAACGCCTTCCAGAAGAATGGGAGGAATGTTGACAAGCGCAAGCGTCTTATGATTGCAATGGATGTGGCCTTTGGTATGGAGTACCTCCATGGAAAAAACATAGTACACTTTGACTTAAAAAGTGACAACTTGCTTGTGAATCTTCGTGATCCACACCGCCCAATATGCAAGGTTGGGGACTTGGGTTTGTCCAAAGTAAAGTGCCAGACTCTAATATCTGGTGGTGTGAGAGGAACCCTACCTTGGATGGCACCTGAACTCCTGAATGGGAGCAGTAGCCTTGTTTCCGAAAAGGTTGATGTTTTCTCATTTGGTATTGTCATGTGGGAACTCCTCACTGGAGAAGAGCCATATGCTGATTTGCACTATGGGGCCATCATAGGTGGCATTGTGAACAACACTTTGCGGCCTCTGGTTCCAGAATCTTGTGATCCAGAATGGAGAGTACTGATGGAGAGATGCTGGTCATCAGAACCATCAGAAAGACCTTCATTTACCGAGATTGCCAATGATTTACGTTCCATGGCAGCCAAGATCTCTCCCAAAGGATAA 4083 0.4301 MRPPPLNVVRSEEPLVSGAVRDNGASGAVPIFYPDGGLAGVRYGNVASGAASTTWCIRPGVPHPTLSPTVGFNFPNRVVGGNAVDLSGSFVATAANGYPLNLGNWVAGNALDNNNLQYTSGRVISNGSDRAGGVGFVGIGSSPPANQQVDQASEKGGDDSVSSRKLKFMCSYGGKILPRPSDGMLRYVGGQTRIISVKRDVSFNDLVQKMVNTFGQPVVIKYQLPGEDLDALVSVSCADDLDNMMEEYERLIERSSDCSPKLRVFLFSASELDPSGLIQFVNLHDGGQKYVEAVNGIAERVIGKLTRKGSLTSAASTQNSDLSGLEAHDSTNAAHADFSGPSISSTLSPDTNIAASNDSATTNVMVSEPIESVCSDVSAVSLGIPVADSGPTHTPPFQKEDEIEKSVPATLSQKQFVLQQPGMQIPPCAPLQAFVDPQQEVLNHAEYVQMPAHMGFPNHQFIGRPETIYSQHHFHDNNARYASQQAIPAVQITMTQPSSHAGIRPSIIHPRTVMQGQQNGFEQYYDENTLGLRMHHQVISEQSYKAYPIQVPFGSNYGWVQVSPSEHAIFHDELLPQQPVMVPQRVEDCYMCEKKLPHAHSDPVVQDQHNSCAALIPDSMASYNSLPVEDSLRAQPTNTQPTNRVLVTTPVKEGNVNFEQEVGTRLRVMIPCSDTSGLPLEAESERNRSDHPRNAVVIPDIVGRTGDKQSPSDGLTETAPLSYLDDFAHQNMVPDENWAEEDVVVNKPVNEIPLVCGKSIETSECVVQVSSTESTNELASTISRADAVENWIAHDLLKPIDGRTDNIKISNPEIFVNNENIDYNTQLAIEKKWVVSDNNLCRSKLSADANQIKTVDALPNSTVEISYSNNSRPVKYNEVEHPPIWGIPGANHQSKNGIHQKDDAFLSSVSQPAGFEHMHDSSNSLFSNQDPWNLRGTYFPPPRPDKVTSKKETYSYMHQSGENSGNIREQTLDVQLDDGLYQTFKQNLTSEEAQYAKGSPEDQQLQAVAESSAASVLHSSTSNPDLQARDVSHHEDIEDGDVKNNQLDIQCKEKTQDDKSKLSEKANFGFPASDVGALQIIRNSDLEELVELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKPSEQERLRADFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMANGSLRNAFQKNGRNVDKRKRLMIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVNNTLRPLVPESCDPEWRVLMERCWSSEPSERPSFTEIANDLRSMAAKISPKG 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03300 1360 CDD PB1_UP2 169 267 - -
Trre3g03300 1360 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1079 1173 - -
Trre3g03300 1360 PRINTS Tyrosine kinase catalytic domain signature 1205 1223 IPR001245 GO:0004672|GO:0006468
Trre3g03300 1360 PRINTS Tyrosine kinase catalytic domain signature 1320 1342 IPR001245 GO:0004672|GO:0006468
Trre3g03300 1360 PRINTS Tyrosine kinase catalytic domain signature 1276 1298 IPR001245 GO:0004672|GO:0006468
Trre3g03300 1360 PRINTS Tyrosine kinase catalytic domain signature 1168 1181 IPR001245 GO:0004672|GO:0006468
Trre3g03300 1360 SUPERFAMILY CAD & PB1 domains 181 271 - -
Trre3g03300 1360 SMART PB1_new 180 269 IPR000270 GO:0005515
Trre3g03300 1360 Pfam Protein tyrosine and serine/threonine kinase 1090 1349 IPR001245 GO:0004672|GO:0006468
Trre3g03300 1360 Gene3D Phosphorylase Kinase; domain 1 1079 1172 - -
Trre3g03300 1360 Gene3D Transferase(Phosphotransferase) domain 1 1173 1359 - -
Trre3g03300 1360 Gene3D - 186 269 - -
Trre3g03300 1360 SMART serkin_6 1086 1355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03300 1360 SUPERFAMILY Protein kinase-like (PK-like) 1079 1349 IPR011009 -
Trre3g03300 1360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1211 1223 IPR008271 GO:0004672|GO:0006468
Trre3g03300 1360 ProSiteProfiles Protein kinase domain profile. 1086 1353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g03300 1360 Pfam PB1 domain 185 267 IPR000270 GO:0005515
Trre3g03300 1360 ProSitePatterns Protein kinases ATP-binding region signature. 1092 1123 IPR017441 GO:0005524
Trre3g03300 1360 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1174 1360 - -
Trre3g03300 1360 PANTHER SERINE-THREONINE PROTEIN KINASE 214 1351 - -
Trre3g03300 1360 CDD STKc_MAP3K-like 1092 1349 - -
Trre3g03300 1360 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 185 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03300 Trre-Chr3 41314380 41321570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03300 165 638 MAP Kinase Kinase Kinase AT3G46920 39.918 1.45e-80 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre3g03300 PK_Tyr_Ser-Thr 1.6e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03300 - - gmx:100776264 1817.74