Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03296 ATGGCAGGAATGCTTCCAGGAGTTGAATCTGCTAGAAGAAGACATGTTCACAAAGGAGTTGGATTTTCTGATTCACCATCTTTGACTTCTCATCATAACACCTCAAGACGCTCTGGTTTCTGTTTGTATGCAAGTAACCATGAATCTCGTCCTTCCTCTTTCTCTTCCTCTTCAATGCAAAGAAACTTATTTTACCAGACACACCAAGATGAGAATATGGTTGGAGCTGCAAGAGAAGCCAAACAGAGATTAAATGACAAATTCAGATCACAAAGGGTATCAGAAAACATAAGGCAAAAGAACATGAAGTGTGTGGAGGGTAGAAAGGAAAGCATAGAAGAGTTACAAATTGAGGTATATGGGTCAAAGAAAAGTGGTCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAGGCATCAGAACAAGATGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGTGAGAAATTGATTCCTCTCCCTTGTGCACACAAATTCCATTCCACATGCTTGAAACCTTGGTTAGAAAATAATTCACACTGTCCATGTTGTAGAACTACCATTCTTTCCCTCTAG 579 0.3972 MAGMLPGVESARRRHVHKGVGFSDSPSLTSHHNTSRRSGFCLYASNHESRPSSFSSSSMQRNLFYQTHQDENMVGAAREAKQRLNDKFRSQRVSENIRQKNMKCVEGRKESIEELQIEVYGSKKSGPRKFSWSKLSWKASEQDDCAVCLESFKIGEKLIPLPCAHKFHSTCLKPWLENNSHCPCCRTTILSL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03296 192 SMART ring_2 145 185 IPR001841 -
Trre3g03296 192 SUPERFAMILY RING/U-box 134 190 - -
Trre3g03296 192 FunFam Zinc finger family protein 119 191 - -
Trre3g03296 192 CDD RING-H2_PA-TM-RING 144 186 - -
Trre3g03296 192 Pfam Ring finger domain 143 186 IPR001841 -
Trre3g03296 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 191 IPR013083 -
Trre3g03296 192 ProSiteProfiles Zinc finger RING-type profile. 145 186 IPR001841 -
Trre3g03296 192 PANTHER SI:CH211-59O9.10 29 190 - -
Trre3g03296 192 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03296 Trre-Chr3 41253956 41255794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03296 1 89 C3H Transcription Factor Family AT2G15580 48.958 2.51e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03296 - - gmx:100527583 259.61