Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03284 ATGGGGAGGAAAAAGAAGCAAATAGGAGAAACAAGTGAAGAAAATGGGAATCATAATAAGGTCGAGGATAAAACCTCGAATCCGTATGATAATGATACTATGATATTTATATGTAAGGCTCAAGAGTTGAAGGAAGAAGGAAACAGGATGTTCCAAAAGAGGGATCTTCAAGGAGCTATGGTGAAGTATGAGAAAGCACTCAAATTGCTTCCGATAAATCATATTGATGTGTCGTATGTGCGGAGTAACATGGCTGCATGCTATATGCAGATGGGAGTTGGTGAGTACCCTAGGGCGATTAATGAATGTAATTTGGCTCTTGAAGTAACTCCGAAATACAGTATAGCTTTGTTGAAGAGAGCGAGGTGCTACGAGGCTTTGAATAGACTGGATTTAGCATTGAGAGATGTTAGTACTGTTTTGAGTATGGAGCCGAATAATATCATGGCATTGGAGATCTCGGGTAAGGTGAAAAGTGCACTTGAAGATAGAGGGTTAAGAGTGAATGATGCGCAAATTGAGTTGCCTCCAGATTATGTCGAGCCTCCTTTTGCTGTGCCTTCCGAAAAGGTAACGAAAGAAAAGAAACACAAGAAGAAGAGCAAAAAAGAGAAGGTCAAGGCTACTGATGAAATTGTAGCGAAACAAGCTGAGGAGAAACTTGAAGAGATGAAAGACGAGGACATTATTGAAGCAATTGAGGCGGAGGACGGTCTCAAAGATAAAAAAAGGGCTAATAAATCTAAAAAGAAGGCGGCCAAGGGAAAAAAAGATAAACTGAAAGATGATGTTAAGGAGGTCAACGATGAAAAATGTAACGTTAGAAGTGAAGATGTACCTAAGAAAACAGCGAAACTTGTTTTTGGCGATGATATAAGATGGGCTCAATTGCCGGCTAATTGCAGCCTCTTTCAGCTAAGAGAAGTTATTTGTGACCGGTTCCCAAGCTTAGGAGCAGTTCTTGTCAAATATAGAGATCAAGAAGGTGATTTGATCACAATCACTTGTGATGAAGAATTGAAGTGGGCAGAAAGAGGATCACAGGGTTCTATCCGGCTGTATATAGTAGAAGCTAATCCTAACCACGACCCATTCTATGAGAAACTTCATGTGAAGGATGTTGAAATTGATAATGCTACTATGAATGGCTGCGTGGTGAAATCAAAGGAAATTATGATCTCATCTTGTGTTGAGGATTGGGTAATTCAGTTTGCACAATTGTTCAAAAACCATGTTGGATTTGAATCTGACAGATACTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAAGCTGTGGAAGAGACTGTTACAAGCGAAGATGCGCAAGGACTTTTTGACATGGCAGGAGGTAAATTCCAAGAGATGACAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCCAGAGCAAGGAAGAAAGTCTATTTAACCGATAATTCTTCTAAAGAGCATATGTATGAACAAATAAAAAGTTCATATGAATGGGCGCAGAAAGAATATGTAAAAGCTGGAGAAAAATTTGAAGCAGCCATTAAAATTAAGTCAGATTTTTATGAAGGCTTCCTTGCTCTAGGTCAGCAGAGGTTTGAACAAGCGAAACTTTCTTGGTATTACGCACTAAGTAGTAATATAGACTTAGCAACATGGCCGTCCACAGAGGTTATTCATCTTTACAACAGTGCTGAGGAGAATATGGAGAAAGGAATGCTGACATGGGAAGAATCGCAAGAGCAGCAGCTGAGTGAAACCTCCAATATTGGATTGGACAGGGTATTTAAACATATGTCATCAGATGAAACTGCTGCACAGGTGGCAAGCATGAGGTCTCAGATAAATCTCTTGTGGGGTACCATGCTATACGAACGCTCGATTTTGGAATTCAAATTAGGGCTACCTGTATGGCATGAGTCTTTGGAAGTTGCAATTGAGAAGTTTGAACATGCAGGAGCATCTCCAACAGATACAGCTGTAATGTTGAAAAACCACTGTTCAAATAACACTGCTGTAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAAGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTCCGTCCTTTCGCTTAGAACCCTTGTTCAGAAGAAGAGTATCAAAAATATACCACGCTTTTGAGCTTGTATGA 2169 0.3965 MGRKKKQIGETSEENGNHNKVEDKTSNPYDNDTMIFICKAQELKEEGNRMFQKRDLQGAMVKYEKALKLLPINHIDVSYVRSNMAACYMQMGVGEYPRAINECNLALEVTPKYSIALLKRARCYEALNRLDLALRDVSTVLSMEPNNIMALEISGKVKSALEDRGLRVNDAQIELPPDYVEPPFAVPSEKVTKEKKHKKKSKKEKVKATDEIVAKQAEEKLEEMKDEDIIEAIEAEDGLKDKKRANKSKKKAAKGKKDKLKDDVKEVNDEKCNVRSEDVPKKTAKLVFGDDIRWAQLPANCSLFQLREVICDRFPSLGAVLVKYRDQEGDLITITCDEELKWAERGSQGSIRLYIVEANPNHDPFYEKLHVKDVEIDNATMNGCVVKSKEIMISSCVEDWVIQFAQLFKNHVGFESDRYLDFHELGMKLYSEAVEETVTSEDAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTDNSSKEHMYEQIKSSYEWAQKEYVKAGEKFEAAIKIKSDFYEGFLALGQQRFEQAKLSWYYALSSNIDLATWPSTEVIHLYNSAEENMEKGMLTWEESQEQQLSETSNIGLDRVFKHMSSDETAAQVASMRSQINLLWGTMLYERSILEFKLGLPVWHESLEVAIEKFEHAGASPTDTAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKLQKGVPSFRLEPLFRRRVSKIYHAFELV 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03284 722 Coils Coil 250 270 - -
Trre3g03284 722 ProSiteProfiles PB1 domain profile. 281 358 IPR000270 GO:0005515
Trre3g03284 722 SMART tpr_5 114 147 IPR019734 GO:0005515
Trre3g03284 722 SMART tpr_5 40 73 IPR019734 GO:0005515
Trre3g03284 722 SMART tpr_5 78 113 IPR019734 GO:0005515
Trre3g03284 722 MobiDBLite consensus disorder prediction 1 27 - -
Trre3g03284 722 Coils Coil 198 227 - -
Trre3g03284 722 Gene3D Tetratricopeptide repeat domain 38 164 IPR011990 GO:0005515
Trre3g03284 722 Gene3D - 271 358 - -
Trre3g03284 722 CDD PB1 289 355 - -
Trre3g03284 722 PANTHER PROTEIN CLMP1 3 720 IPR044517 -
Trre3g03284 722 SUPERFAMILY TPR-like 40 163 IPR011990 GO:0005515
Trre3g03284 722 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Trre3g03284 722 MobiDBLite consensus disorder prediction 242 262 - -
Trre3g03284 722 SMART PB1_new 281 358 IPR000270 GO:0005515
Trre3g03284 722 SUPERFAMILY CAD & PB1 domains 282 367 - -
Trre3g03284 722 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Trre3g03284 722 MobiDBLite consensus disorder prediction 184 208 - -
Trre3g03284 722 Pfam PB1 domain 283 356 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03284 Trre-Chr3 41066098 41068347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03284 23 147 Calmodulin-binding Proteins AT3G25230 32.374 3.63e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03284 K26538 - gmx:100820306 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03284 3 41066098 41068347 Trre3g03284 3 41066098 41068347 ECH