LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g03266	ATGACGTCACGTTCGTCGCACGGCGGCGGCAACAGCCAACGGCCTAGAGCAGGGAAGTATGAGCTGGGCAGGACGCTTGGCGAAGGAAATTTTGCAAAGGTCAAGTTTGCCAGACATGTTGAAACTGGTGAACATGTAGCTATCAAAATTCTTGACAAGGAAAAAATTCTCAAGCACAAAATGATTCGTCAGATAAAGCAAGAAATATCAACAATGAAATTGATTAGACACCCAAATGTCATACGCATGCATGAGGTAATAGCGAACAGGTCAAAGATATTCATTGTAATGGAAATTGTGACTGGCGGGGAGCTGTTTGATAAAATTGCACGCAATGGGAGGTTGAAAGAAGACGAAGCAAGAAAATACTTTCAGCAGCTTATATGTGCTGTGGACTATTGTCATAGTCGAGGCGTTTGCCACAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAACGGAGTGCTTAAAGTATCGGATTTTGGATTGAGTGCATTACCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGCGGTACTCCAAATTATGTTGCTCCAGAGGTGATCCAAAACAAAGGGTATGATGGTGCAATTGCAGATCTTTGGTCATGTGGTGTTATTCTTTTCGTTTTAATGGCCGGCTATTTGCCCTTTGAAGAAGACAATCTTGTGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTTACGTGTCCTCCTTGGTTCTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAGTCCTGTCACAAGGATTAAAATTGCTGATGTCATTGAAAATGAGTGGTTCAAGAAGGGATATACGCCTCCTGTGTTTGAACAGGCTGATGTTAGTCTTGATGATGTAAACTCTATTTTCAACGGTTCTATGGATTCGGATAGTATTGTTTTTGAGAGGCATGAAGAAGGGCCTGTTGCACCTGTGACCATGAATGCGTTTGAACTTATCTCTAAATCTCAGGGCCTCAACCTTGGTAGCCTTTTTGAGAAGCAAATGGGACTTGTTAAAAGGGAAACAAGATTCACATCTAAATGTTCAGCGAATGAGATAATTTCAAAAATCGAGGAAACTGCTGGACCTATGGGTTTTGATGTAAAGAAGAACAACTGCAAGTTAAGGCTTCATGGGGAAAAATCTGGAAGGAAAGGTCATCTATCTGTAGCCACGGAGATCTTGGAGGTGGCCCCTTCACTTTACATGGTTGAGATGCGAAAATCTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAAAGTATATCGACTGGGCTGAAAGATATTGTTTGGAAAGCAGATCCTATTGCTGAAGGAAGTGATGATGGTTAG	1362	0.4163	MTSRSSHGGGNSQRPRAGKYELGRTLGEGNFAKVKFARHVETGEHVAIKILDKEKILKHKMIRQIKQEISTMKLIRHPNVIRMHEVIANRSKIFIVMEIVTGGELFDKIARNGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIQNKGYDGAIADLWSCGVILFVLMAGYLPFEEDNLVALYKKIFKAEFTCPPWFSSSAKKLIKRILDPSPVTRIKIADVIENEWFKKGYTPPVFEQADVSLDDVNSIFNGSMDSDSIVFERHEEGPVAPVTMNAFELISKSQGLNLGSLFEKQMGLVKRETRFTSKCSANEIISKIEETAGPMGFDVKKNNCKLRLHGEKSGRKGHLSVATEILEVAPSLYMVEMRKSEGDTLEFHKFYKSISTGLKDIVWKADPIAEGSDDG	453

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g03266	453	CDD	STKc_SnRK3	19	274	-	-
	Trre3g03266	453	MobiDBLite	consensus disorder prediction	1	20	-	-
	Trre3g03266	453	ProSiteProfiles	NAF domain profile.	317	341	IPR018451	GO:0007165
	Trre3g03266	453	FunFam	Non-specific serine/threonine protein kinase	316	442	-	-
	Trre3g03266	453	FunFam	Non-specific serine/threonine protein kinase	13	315	-	-
	Trre3g03266	453	Gene3D	Transferase(Phosphotransferase) domain 1	100	281	-	-
	Trre3g03266	453	CDD	CIPK_C	323	438	-	-
	Trre3g03266	453	FunFam	Non-specific serine/threonine protein kinase	11	99	-	-
	Trre3g03266	453	ProSitePatterns	Protein kinases ATP-binding region signature.	26	49	IPR017441	GO:0005524
	Trre3g03266	453	Gene3D	Phosphorylase Kinase; domain 1	9	99	-	-
	Trre3g03266	453	SMART	serkin_6	20	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre3g03266	453	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	11	434	-	-
	Trre3g03266	453	SUPERFAMILY	Protein kinase-like (PK-like)	17	296	IPR011009	-
	Trre3g03266	453	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	139	151	IPR008271	GO:0004672\|GO:0006468
	Trre3g03266	453	Pfam	Protein kinase domain	20	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre3g03266	453	ProSiteProfiles	Protein kinase domain profile.	20	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre3g03266	453	Pfam	NAF domain	319	379	IPR004041	GO:0007165
	Trre3g03266	453	Gene3D	Kinase associated domain 1, KA1	317	442	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g03266	Trre-Chr3	40859022	40863743	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g03266	12	448	CBL-interacting serine-threonine protein kinases	AT1G01140	67.269	0.0	636

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Trre3g03266		Pkinase	6.7e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g03266	-		-	gmx:100788746	780.4