Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03252 ATGACCACCAAGTATCATCCTGTTAAAGATATTAACAAAAAGAAAGAAATCTGGAGACTTGCTGTTATTCTAGACGACATTTGGAGTGTTCATAAGGGAGATACCGAAGATCATCTTGAGATTTTGATAAGAGATGTAAATGGAGACACTATCCAAGGTATCATCAACGGTGATGATCTGTTGAAATGGAAACAACTTTTGAAAGAAGGCTCGACGTACTTCATGCGCAATTTTAGGGTTTCTGACAATGACTTCCAGTACAAAATGTCTGAACACATTAGCAAGTTGACTTTTGTTGCTGCTACTCAAGTCAATGAACTTGATGTTCCTGAAATCCCACCTAATGTTTTTAAGTTCAAGGATTTTAGTGAAATTAAAAAAGGAAGTTACCGTCAAGATCTTTTAGTTGATGCTATTGGAGTTGTAGATGAGATAGGCAAATGTGTCACTGGAAATGCATCCAGAAAAGGAAATGTTGCATTCGTAATCAAAGACTTAAGTGAGAATACACTTGATGTTACATTGTGGGATGCGCTGTCTATCAAATTCCTTGACTTCTATAACAATCGGAGTGATCTTGGTCCTGTTGTACTCATTATCAAACATGCTCGCGTCAAAGAGGCACAGGGTAACTATCCCTTGCAATTCACAAATGTCTGGAATGGGACCAAGCTTTTGTTTGATGAAAACATACCTGAGATTAAAGCATTTAAAACTAGCTTGCCTAAGGATGTTACCTATGCATCCCAAAGTTTGAGCATTTGCGCTACACCTCAATCTTACTCCCAGAGTTCCGGTGTGTCTCAGTACAATTCAGACGAGCTGTTCATGAAGAATGCTCGTGTCATACGTATTGGAGATATGAAAAACCTCAGAACAGATACTTACTGTGTTACAGTTGTGAAAACCGAACATGTAAAAACTTCTAATCAAGGATGGTATTTTCGTTCCTGTCGTGAATGTAACAAAAAGGCTGAGGGCAAACAACCTCCTTTTATTTGTAAAGGGGGCCACCAATCCACTGATCCCATTATTAAGTATAAGGTGGACGTTACCGTAGTTGACGGGGATGATAGTGCAAAGTTTGTTTTCTGGGATAGTACCCTTGAAGAATTGTTGGGCAAAACTGCAAGAGTTCTTTTGAATGAAATGGAAGAGAAAGGTTTACCTGATCCCACTGATTACCCTGAGGAACTAGATGACTTGATGGATCGCACTTTTGCATTCCGAGTTAAATGGCAACATTCTTGGGGCCAGGCTTCTGTCAGCCTATGCAAAGATAATCCGGATTTGGTTGCTAAAATTAAAGAATTCTGGCCAAATGTTGAGACCACTCCACTGTCAAATCCACAATTAGATACAATTGACCCTCAGCCCCATCAGTCTTTTTCTCTTGACGACATTTCAAAGTTTGACAACTTGGATGATGCAATGCTATGCACTCCAAATGTTGTTGCTTCTGTTGAAACTGATTCACCTCTGTCTACTTTTAAAACTCCTAATGTCAAAAGAAGTGCAAGAAACAAAGCAGCCGAAGATGTTTCTGATACTCAGATGTCGTCCAACAAGCCTGGAAAGTTAATTAAAAAAGAGAAATGA 1599 0.3909 MTTKYHPVKDINKKKEIWRLAVILDDIWSVHKGDTEDHLEILIRDVNGDTIQGIINGDDLLKWKQLLKEGSTYFMRNFRVSDNDFQYKMSEHISKLTFVAATQVNELDVPEIPPNVFKFKDFSEIKKGSYRQDLLVDAIGVVDEIGKCVTGNASRKGNVAFVIKDLSENTLDVTLWDALSIKFLDFYNNRSDLGPVVLIIKHARVKEAQGNYPLQFTNVWNGTKLLFDENIPEIKAFKTSLPKDVTYASQSLSICATPQSYSQSSGVSQYNSDELFMKNARVIRIGDMKNLRTDTYCVTVVKTEHVKTSNQGWYFRSCRECNKKAEGKQPPFICKGGHQSTDPIIKYKVDVTVVDGDDSAKFVFWDSTLEELLGKTARVLLNEMEEKGLPDPTDYPEELDDLMDRTFAFRVKWQHSWGQASVSLCKDNPDLVAKIKEFWPNVETTPLSNPQLDTIDPQPHQSFSLDDISKFDNLDDAMLCTPNVVASVETDSPLSTFKTPNVKRSARNKAAEDVSDTQMSSNKPGKLIKKEK 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03252 532 SUPERFAMILY Nucleic acid-binding proteins 4 107 IPR012340 -
Trre3g03252 532 SUPERFAMILY Nucleic acid-binding proteins 117 248 IPR012340 -
Trre3g03252 532 Gene3D - 2 106 IPR012340 -
Trre3g03252 532 SUPERFAMILY Nucleic acid-binding proteins 293 415 IPR012340 -
Trre3g03252 532 Pfam Domain of unknown function DUF223 41 135 IPR003871 -
Trre3g03252 532 PANTHER OS03G0429900 PROTEIN 158 514 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre3g03252 532 CDD RPA1_DBD_B_like 137 242 - -
Trre3g03252 532 Gene3D - 110 248 IPR012340 -
Trre3g03252 532 Gene3D - 261 438 IPR012340 -
Trre3g03252 532 CDD RPA1_DBD_A_like 19 104 - -
Trre3g03252 532 MobiDBLite consensus disorder prediction 492 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03252 Trre-Chr3 40737379 40740168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03252 1 411 Core DNA Replication Machinery Family AT5G08020 21.546 2.90e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03252 - - tpra:123884216 587.03