Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03246 ATGTTGGTACGGCAAATTGTAACAGCATTTCTGTTACTATCAGCTAGCTATCTGCTTTATGATTTCCAATTCCGCTTCAAACACTTGCTCGGGAATTCTGGTCATGAAGGGTCAGAAGCTGATAAGGTAACTTTGCCTGATCAGCCTGATGTGATGTTTAACCAGTTCGCTGGTTACATCACGGTTGATGCAATTCAAAAAAGAAAATTGTTTTACTACTTTGTTGAAGCCGTCAAGGAACCAGCATCGAAACCGGTTATTCTTTGGTTGAATGGAGGCCCTGGTTGCTCCTCCGTTGGACAGGGTGCTTTTACAGAGCACGGCCCATTCAAACCTACTCAAGAGGGTCTTGTGGAGAACCCTTACAGCTGGAATAGAGAGGCCAACGTCCTCTACCTAGACTCACCAGCTGGTGTTGGCTTCTCCTATTCGGCCAACACATCTTTTTATTTTTTCGTGAACGATGAAATTGCAGCAAGGGACCATCTCTTATTTCTCAAGGGTTGGTACTCCAAATTCCCACTGTACCAATCCAATGATTTCTTCATCACTGGAGAGAGCTATGGAGGGCACTATGCTCCCCAGCTTGCCCAGCTTATTCTTCAATCCAAAACCAACATCAGTCTAAAGGGGATTTTGATAGGGAATCCTCTTTTGGATTTTGACGTAGACTTTAATTCCCGAGCGGAATTTTTATGGTCGCATGGTCTGATTGCGGATTCCACCTACGAGAGGTTCACCAAAGTCTGCAACTACTCTAGGATCCGGAGGGAGGCTCGGCGTGGTAATACGAGTGTACTCTGTGATGAGGTGTATCAAGAAGTCACAACAGCGACTAGCAAATACATTGATACGTTCGATGTAACGCTGGATGCATGTCAACAATCCGAGCAGGCACGCAGGCTGACTTTTTCGCATACTGGAGAAAAGATCGATGTATGTCAGGAGGACCGAGTGTCCAAGTACTTGAACAGGAAGGACGTCCAGCAAGCTCTTCATGCAAATCTTGTAGGCGTCAACGATTGGTCAACCTGTAGTGGAGTCTTGGTATATAACTTTTCAAATCTAGAGAATCCCACCACATCTTTGCTAGGAACACTTGTTAAGGCAGGTGTAAGGGTTCTAGCATATAGTGGTGATCAAGATTCAGTTATACCATTGACCGGGACAAGAACTTTACTTAATGGATTGGCAAAAGATCTAGCGCTCAATACAACTGAGGTGTATAGAGTTTGGCTTGAGGGTGGACAGGTGGGTGGATGGACAGAGGTGTATGGGGAGGGTTTACTCGCATTTGCAACAGTGAGAGGAGGAGGTCACGCTGTTCCATTTACTCAGCCCGAGCGAGCATTGGTAGTGCTGAAATCTTTTTTGGAAGGAAAGTCACTTCCAATTATTTGA 1401 0.4532 MLVRQIVTAFLLLSASYLLYDFQFRFKHLLGNSGHEGSEADKVTLPDQPDVMFNQFAGYITVDAIQKRKLFYYFVEAVKEPASKPVILWLNGGPGCSSVGQGAFTEHGPFKPTQEGLVENPYSWNREANVLYLDSPAGVGFSYSANTSFYFFVNDEIAARDHLLFLKGWYSKFPLYQSNDFFITGESYGGHYAPQLAQLILQSKTNISLKGILIGNPLLDFDVDFNSRAEFLWSHGLIADSTYERFTKVCNYSRIRREARRGNTSVLCDEVYQEVTTATSKYIDTFDVTLDACQQSEQARRLTFSHTGEKIDVCQEDRVSKYLNRKDVQQALHANLVGVNDWSTCSGVLVYNFSNLENPTTSLLGTLVKAGVRVLAYSGDQDSVIPLTGTRTLLNGLAKDLALNTTEVYRVWLEGGQVGGWTEVYGEGLLAFATVRGGGHAVPFTQPERALVVLKSFLEGKSLPII 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03246 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 44 447 IPR001563 GO:0004185|GO:0006508
Trre3g03246 466 FunFam Carboxypeptidase 36 464 - -
Trre3g03246 466 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
Trre3g03246 466 Gene3D alpha/beta hydrolase 36 464 IPR029058 -
Trre3g03246 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Trre3g03246 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Trre3g03246 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Trre3g03246 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Trre3g03246 466 Pfam Serine carboxypeptidase 49 460 IPR001563 GO:0004185|GO:0006508
Trre3g03246 466 SUPERFAMILY alpha/beta-Hydrolases 50 463 IPR029058 -
Trre3g03246 466 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03246 Trre-Chr3 40699693 40704578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03246 319 463 Calmodulin-binding Proteins AT2G22960 23.973 5.09e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03246 K16297 - gmx:100805028 603.594