Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03241 ATGAAGCAGTCTTTTGATTCATCATTTTCTGGTCCTTCCAAGATTCCACCAATAAGTATATCTGGAACGTCAGGTTATGGCGCATTGGAAGTTTTATCTGGATCTGATTCATTTCATACTTCGTCTGATGCTAGTCTCTTTTCCAGCTCATTACCTGTTCTTCCACACGAAAAATTGAACTTAAATGAAATTGAAAATGGTTTTCAATCCGTTGATGATATCTCAACTAGCTTTAAAAAGCTTCATCAAGAGGAAGACCTCAATGATTCCCTTGAAGATAGTAATAATCATGCAATTGGAACCATGCTTCCTGATGACGACGATGAGCTTTTGGCTGGAATAATGGATGATTTTGACCTAAGCGGTTTACCTGGTTCCCTTGAGGACTTGGAAGAGTATGATATTTTTGGTAGTGGTGGTGGTTTGGAACTAGAAACCGATGCACAAGAAAATCCCAGTGTGGGAATATCTAAGTTAAGCTTCTCTGATAGCTCTGTTAGCAATGGTTTGCCCCCTTATTCTGTACCTAATGGCTTGGGAGGTGGAGCCGTTGCCGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGAAATATTAACAGCAACGTGGAGGATACAGAGCTGCGGATTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCGTGTAAACACAGGGGGTTTGTAATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCCATGCGGGCATTACAAAACAAACCATTGCGGCGAAGGAAACTTGATATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGACCCATCTGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATATTATGATGTAAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGTGTGACATTGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCGCGTCGCAATTTGATGCTCCAACTGAATCAAGAGCTTGACCAAGACGAGTCTCGAAGTTTTCGATATCAAGTGGGTTCACCTCTAGCCAACTCTCCGCCAGGTAATTGGTTACAGTTCAGCAGCCCTGTCGAGCAGAGTTCATTGCCAACTGTCAATCATTCTCCTGGTTCTAGTATCATGAGCCCAACAACCCGATCTAATTTACATGGATTAGCTTCAATTTTGCAACCACAGGTATCTAACACATCGAAGGCCACAACTCTTGGCAAAGATATAGGAAGGAGTAGTTATGGAGACCACATATTTTCCAATACGAGTTCATCCTCTGGAGGATCTACTTTCAACTCACATTCACTTCCAGAGCCAAAATTTAGTCAATATCGTGGAACTTTATCCTCATTTGTTGCATCAACATCAAATAGCTCTTCAGTAGAGACCTTGACCGCTCCACAGTTTCTATGGGGAAGTCCAAACGTATCCTCAGCGCAAACCAAACCTTCGGTTTGGCAAAGACCATCCGTGGGACATCAACTTAGTACATTGAATGGATCGAATCATCCTTTCCCATACACAAGTCAGAGCAATTCCTTTGTCAGTTCGTCCCAGCAACATCACCATCATCATGTTGGTTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTTTTCCCCAAGTCATCTGAAACTTCATTGATGAATAATGTTAGCTATACTGGCATGAGTCTAGGGCACAATGATGGAAAATACTTGCTTAATGCTGCCATTTCTGGTAATGCCAGCGTTTCTATTCCAAGAAGTATGGCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTGTACTTAGTCCCGTGTTTTTGGGTAATGGTCCTTATCCAGGAGTTTTGCCGACTGCTATGGAGAGTTTATCTGACCGTGTTAAGAGTAGATGGATCGATAACAATGGTAGCCAAGTTGACAGCAAGAAGCTATTTCAGCTCGACTTGGATAAGATCAAAAGTGGTGAAGATAAGAGGACTACATTGATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTGTTGGCTGCTATTGATGAATATCACAAGGGAACCTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAATGTCGGTTATGCATTTATCAACATGCTGTCACCCTCACATATTATTTCATTCTTCGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCTTATGCTCGAATCCAAGGGAAGAATGCCCTTGTGAACCATTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGACCTATTGTCTTCCACTCAGATGGTTCTGAAGCTGGTGATCAGGCCATACATGAGCATCTCCCCTCCAACTACAACAATATTCAGGCAGTTAAGTCAAGCGAGTTACAATTAAGCGATTCACTCGGATTCCCTACAAAGGACGGTTTTCATGTGAATTTGAATGCAAATTAA 2592 0.4124 MKQSFDSSFSGPSKIPPISISGTSGYGALEVLSGSDSFHTSSDASLFSSSLPVLPHEKLNLNEIENGFQSVDDISTSFKKLHQEEDLNDSLEDSNNHAIGTMLPDDDDELLAGIMDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDAQENPSVGISKLSFSDSSVSNGLPPYSVPNGLGGGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRCDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPLANSPPGNWLQFSSPVEQSSLPTVNHSPGSSIMSPTTRSNLHGLASILQPQVSNTSKATTLGKDIGRSSYGDHIFSNTSSSSGGSTFNSHSLPEPKFSQYRGTLSSFVASTSNSSSVETLTAPQFLWGSPNVSSAQTKPSVWQRPSVGHQLSTLNGSNHPFPYTSQSNSFVSSSQQHHHHHVGSAPSGLPFERHFGFFPKSSETSLMNNVSYTGMSLGHNDGKYLLNAAISGNASVSIPRSMADNGSSNFRMRSSPVLSPVFLGNGPYPGVLPTAMESLSDRVKSRWIDNNGSQVDSKKLFQLDLDKIKSGEDKRTTLMIKNIPNKYTSKMLLAAIDEYHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSHIISFFETFNGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHSDGSEAGDQAIHEHLPSNYNNIQAVKSSELQLSDSLGFPTKDGFHVNLNAN 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03241 863 MobiDBLite consensus disorder prediction 549 571 - -
Trre3g03241 863 CDD RRM3_MEI2_like 702 787 IPR034454 -
Trre3g03241 863 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Trre3g03241 863 FunFam MEI2-like protein 5 isoform 2 185 279 - -
Trre3g03241 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Trre3g03241 863 Gene3D - 280 379 IPR012677 -
Trre3g03241 863 CDD RRM1_MEI2_like 195 271 IPR034453 -
Trre3g03241 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 348 IPR000504 GO:0003723
Trre3g03241 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Trre3g03241 863 MobiDBLite consensus disorder prediction 402 422 - -
Trre3g03241 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Trre3g03241 863 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g03241 863 SUPERFAMILY RNA-binding domain, RBD 701 786 IPR035979 GO:0003676
Trre3g03241 863 FunFam Protein MEI2-like 1 280 375 - -
Trre3g03241 863 SMART rrm1_1 197 265 IPR000504 GO:0003723
Trre3g03241 863 SMART rrm1_1 282 350 IPR000504 GO:0003723
Trre3g03241 863 SMART rrm1_1 701 777 IPR000504 GO:0003723
Trre3g03241 863 MobiDBLite consensus disorder prediction 549 565 - -
Trre3g03241 863 Gene3D - 185 279 IPR012677 -
Trre3g03241 863 Pfam RNA recognition motif 2 699 795 IPR007201 -
Trre3g03241 863 CDD RRM2_MEI2_like 280 350 - -
Trre3g03241 863 PANTHER RNA RECOGNITION MOTIF-CONTAINING 39 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03241 Trre-Chr3 40540877 40545638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03241 191 389 Eukaryotic Initiation Factors Gene Family AT1G71770 26.009 1.30e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03241 - - gmx:100787152 1329.69