Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03220 ATGGGTCGTGGTCGTGGGAAAGTAACTATGAAACGAATTCAAAATGAGAAAACTCGGAAATCAGCTTTTAATCAGAGAAAGGAAGGGTTAACAAAGAAAGTGTCTGAATTTTCTAAAAAGTTTGGAGCGGAAGCTTGCTTAATTGTGTATGACGGCGATGATAGTGATGCTAGACCAATGACTTGGCCAAAAGACTTGACAGTCGTACAATCCATGCTTCAAAAATACGAGGTTCAAAAGATTGAGACTGCTCCGAAGAAATTTGATGTGAAAGATTATTTTGCAAATAGGAAGAGTACGGTTGAAGGAGAGATTTCGAGAGTGCACAAGAAGATGGTGATGAACAAGTATCCAACTTGGGGTCGATGTTTCAATAACATGGAAATGAAGAATCTCAGAGACTTCATTGATATTGTAGATCTCAAGATTCAAGCTTGTAATAAAAGAATCGACATGCTCAAAAATATGCAACAAAATGATCTCATACAAAACACCGAGGCTCCAGGGAATGTTCCTTTTCAATCAAGTCATCAACTTGATGATCCAATGAAGCCACTTATTGATATTAGTGAGATGATAGATTTCACCGATCATATCGATTGGGATAATCTAATGGCTGAACACGGTGAATTGGATCCAGCTCAACATGTCGAATTTAATCAAAAAACTGTGGCTCCAGAGAATGTTGCTTCTCAATCAAGTCAAGTTGATGATCCTATGAAGCAAGTTATTGATATCAGTGAGATGATAGATTTCACTAATCATATTGAGTGGGATGATATAATGGCTGAACATGAAGAATTGGATGATCAACTTGTAGAATTTAATGATTGTGCTAATAAAAAAACTGTGGCTCCAGAGAATGATGTAATTGTCTCTCCACAATCAAGTCAACTTGATGATCCTATGAACCCAATTATTGATATCAGTGAGAAGATAGATTTCAGTAATCATGTGGAGTGGGATGATCAAATGACTGAACTTGAAGAATTGGATACTCAACAATTTGTAGAATTTAATGATTGGGCTAATTAA 1035 0.3633 MGRGRGKVTMKRIQNEKTRKSAFNQRKEGLTKKVSEFSKKFGAEACLIVYDGDDSDARPMTWPKDLTVVQSMLQKYEVQKIETAPKKFDVKDYFANRKSTVEGEISRVHKKMVMNKYPTWGRCFNNMEMKNLRDFIDIVDLKIQACNKRIDMLKNMQQNDLIQNTEAPGNVPFQSSHQLDDPMKPLIDISEMIDFTDHIDWDNLMAEHGELDPAQHVEFNQKTVAPENVASQSSQVDDPMKQVIDISEMIDFTNHIEWDDIMAEHEELDDQLVEFNDCANKKTVAPENDVIVSPQSSQLDDPMNPIIDISEKIDFSNHVEWDDQMTELEELDTQQFVEFNDWAN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03220 344 ProSiteProfiles MADS-box domain profile. 3 50 IPR002100 GO:0003677|GO:0046983
Trre3g03220 344 CDD MADS_SRF_like 4 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre3g03220 344 SMART madsneu2 3 64 IPR002100 GO:0003677|GO:0046983
Trre3g03220 344 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Trre3g03220 344 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Trre3g03220 344 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Trre3g03220 344 SUPERFAMILY SRF-like 4 77 IPR036879 GO:0003677|GO:0046983
Trre3g03220 344 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03220 Trre-Chr3 39880335 39881369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03220 4 149 Type I MADS-box Gene Family AT5G55690 34.667 1.11e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre3g03220 SRF-TF 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03220 - - tpra:123922587 288.115